RNA id: TU800459


Basic Information

Item Value
RNA id TU800459
length 2327
lncRNA type intronic
GC content 0.38
exon number 2
gene id G679700
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1481788 ~ 1484144 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTTCAGGTGCGAGAGGTCCCGGATTCAAATCCCGGACGAGCCCCCAATTATGTTACGCTCCCTGATGTAAATGTCTAGGAGTCAGGAGGGACACAAAACGAATTTTTGTCTCGCCAAAGCCTTATTTGATCAGTTATTGAGAGATGTTTATTAGTGATGCAGATGACTGCTGCGCTTGTGATAGGGCGCATGTTAACTGGCGGAGAGAACGAGCAGAGAGCTCCTCCCTTGTACGCGCGAACTCTCTCGGTCTTCAAACTAAGCGCTGTATTTGCTCTCTCTCCCTCGCACATAATAATCTAAATAAACGGGCACGATGCTAAAAGTTCGGAAGACTGAATCCATGTTTCACGTGGCGCATTCAGAATTTTTTTTTCCTGTATAACCGCTGGGTGTGAATAGTGCTCAAAAGAACATTACCTCTCTGACAGGCAGCTGACATAAACCACACTTTCAATAAACTAAGAAAAAAAAAATGTGTTGACAAATCTTTTTATGATGTCCTAACAGCTGCGATTCGCACGCAACGCATCCACGTCCACTAATGTCTGATTCGCGACCTAATGACTCATTTGAACAAATTCATTTTAATAAATCGTGAAAACAACTGATCTGTCCAATACTGAACTCACTGTCTGAATCTGTGTAACAGTTATAACAAATCATTTACTCAGAACAACTCTGAAATGAGAACGTAAGTGTGCTTACCCCAAGAGTGTTTAGTAAGATTTAGCCTTAATTATCCACAGTATTTTCAGGTTATTTATATGACAATGTGTAGTAATTAAGCCTAGCTATAAAATCAGTTAGTTTAGACTGGAGTGAGGTGAAACCAGAACAAAGCTAGGTGCATTCAGTTGTATATGGTAGAAAATTAGATTATTAATTAAATTAACTTTTTAATGCTTCTTTTTAATACTGATTATTAATAATAATAATAATTATTATTATTATTATTATATATACCAAAATAATTTTCAGGTCTAGCAAAGAAGCATCTTCTATAAAATCACAGATTTTTTTTTTGCAAAGAGGGCAAGAAAGGATGACAGTGAGAGTGGCGGGTACATTATTGTCAGTACTGGGCTCGCAGATCACGTGGGTAGGGTACTTTTTACTGTTTGTGTCGATGACCATGTCTGTCAGCCACCACCGAATATCATTTTTGACCCAGGAAAAACCCTGCATAATAGATGGACAACAGCTTAAGTATTCCAAATAAATTATTTATTCCAACACAAATTACTCACAAAAGTAACCAAATTGAGAGACGAGGATCCCAGCAACAAAGGGAAAAAAAATAACTCCACTAATAAAGTCAAGCTGGGACTCCCCACTCCAAAATAAAATTACAAACTAAGGTGAAAAATAAAAACGTAGTGATGTGGCTGTGAATAAGTGAGAAACTGAGAGTTCGCCTCCTTCTGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTAGGTGGGTGTGTCTGTGTGTGTGTGTGTGTGTGTATATATACATGTATATAATTCAGTTGATGTTTAAAGTAAGTTTGCTTGTTTTCTGCCTGCGGACTACTCCGTGTGTTTTGACAGTGAGTGTAATTAAAGGTTTTGGCTGCGTGACCTGCTGCGGAGCGATCAGAGCTCCATCAGACGTGACTGTGGCGAGATGCTGAAGTGTCAGACTTATTATCTCCTGTGACAATGAGACACGCACACACACGTCTCGCTGATGATACTCACTGGTCACAACACAGCTGGAGTAGTACACGTGTAACCATAAAACACAGTCATGGCAGTGTGAGAATGAATGGAGTCAACTATGGACTTTCTCATATTGTTTATTATTAGTATGCTTATGTATATTATACAATAAATACATTTAAATTTTGCCAATATTTCAATTAATATTTATTTACTTATACAACAGTTATTTCTGGTTCTCGAATCTGATCCACCATATTTTTTATAAATGTAACTGTTATGTCACAAAATGTAGTTTTAAGAGTTTTTTAGGTGAGAATGTAGTTGTTAAGACCTTAAATATGTGACTCATAGCACCTGTTTTACTACAAATGTGAACTCCAGGCCATCAGCGACTGCTCAGTGCTCGTGTACCCGCCGAGAATGGCTTCATCTTGGCCAGTCCTTTGCGTATTTGCCGCTTACTCTTATGTAGATAGTGGTTAAATGAGATATAATTAATTTGGGGTATATCAAATGGTCAATCTTTGGTCTTATTAATCTATTACTTGTTCCAGAGCAAAATAATTTGGGTTAAGTGGAAAAGTAAGTTTCATAACTTTATATTTAGGCTATATTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800446 lncRNA downstream 48868 1431967 ~ 1432920 (-) True G679687
TU800460 lncRNA downstream 50048 1431485 ~ 1431740 (-) True G679701
TU800450 lncRNA downstream 50823 1429694 ~ 1430965 (-) True G679691
TU800586 lncRNA downstream 194693 1259390 ~ 1287095 (-) True G679822
TU800551 lncRNA downstream 336386 1091004 ~ 1145402 (-) True G679788
TU800447 lncRNA upstream 90094 1574238 ~ 1589735 (-) True G679688
TU800674 lncRNA upstream 114610 1598754 ~ 1599172 (-) True G679897
TU800715 lncRNA upstream 250998 1735142 ~ 1735716 (-) False G679923
TU800718 lncRNA upstream 251256 1735400 ~ 1735716 (-) False G679923
TU800719 lncRNA upstream 251256 1735400 ~ 1735743 (-) False G679923
CI01180000_01424083_01427043.mRNA mRNA downstream 54401 1423527 ~ 1427387 (-) True CI01180000_01424083_01427043
CI01180000_01369334_01369786.mRNA mRNA downstream 111756 1369004 ~ 1370032 (-) True CI01180000_01369334_01369786
CI01180000_01366302_01368307.mRNA mRNA downstream 112982 1366263 ~ 1368806 (-) True CI01180000_01366302_01368307
CI01180000_01250357_01273327.mRNA mRNA downstream 208003 1250291 ~ 1273785 (-) True CI01180000_01250357_01273327
CI01180000_01180852_01194369.mRNA mRNA downstream 287419 1180596 ~ 1194369 (-) True CI01180000_01180852_01194369
CI01180000_01500501_01503809.mRNA mRNA upstream 15501 1499645 ~ 1504246 (-) True CI01180000_01500501_01503809
CI01180000_01554271_01567480.mRNA mRNA upstream 69761 1553905 ~ 1567480 (-) True CI01180000_01554271_01567480
CI01180000_01592917_01610651.mRNA mRNA upstream 107765 1591909 ~ 1610651 (-) True CI01180000_01592917_01610651
CI01180000_01612108_01616924.mRNA mRNA upstream 127964 1612108 ~ 1616924 (-) True CI01180000_01612108_01616924
CI01180000_01618180_01626362.mRNA mRNA upstream 133748 1617892 ~ 1626362 (-) True CI01180000_01618180_01626362
TU800565 other downstream 311260 1169859 ~ 1170528 (-) True G679801
TU800690 other upstream 294448 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800691 other upstream 294448 1781450 ~ 1781488 (-) True G679907
TU801392 other upstream 1132210 2616354 ~ 2616756 (-) True G680525
TU801369 other upstream 1286903 2771047 ~ 2851916 (-) True G680506
TU801372 other upstream 1502937 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955

Expression Profile