RNA id: CI01180000_01618180_01626362.mRNA


Basic Information

Item Value
RNA id CI01180000_01618180_01626362.mRNA
length 1844
RNA type mRNA
GC content 0.52
exon number 7
gene id CI01180000_01618180_01626362
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1617892 ~ 1626362 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGCCACACTTCCTCCCCTGAGCATGGAGATGAAGATCTGACTCTGCGTCCTCCTAGCACAGGCCCCTCTCCACACTCTTCTCCAGCCCTGACGCCCCGTCTGACTCATGGGAGTGTGACCGGGAGCACAGAGCCTGAAGAAGGCACATCCCTAAGTACCCAGCAGGCCCTGGGCAGCACAGAGACCCTGAAGCGGGGCGGAGACGAGCAGCTCCTCAGCAGCTGCGAGTCAGCAAAGACCATTTGCGATTCTCAGATTGTAGGCGTTGATGAGGAGGGCAGCATCGTGGGAAACCGCACGCCCTCCATCAGTGTAGAGGAGGAGCATGACGGGCCAGTAGGCAGCCCGGTGGAGTCAGAGGACCATTTCGATTGGACCAGTGAGGAAGCGCCACGCCGACCTGACAGCCTGAAGGGAATCCAGTCCTTCCAGAGGAGCCACAGTAACCTGGCCAGTCTGGGTTTGGCTTTTCCTGCACAGAACGGCTCTCTGACTATCGCACGCTGGCCCACTGTAACTGACCGTGCCGCCCCACCAGATGACTGGGAAAGCTACACATACTCACCCGGTTATGACAGACACAGCAAGGCGGACTCCAGTAATGACAGGTCCAGTGCAGAAGATTGTCTGGTTCTGATCTGCTGCGGTCTGTATGATCTGCTGAGAGGGGTTCTGCTTCTGCTGCCGGACCTCCTGTTGGAGGAGGTGATGGACAAACTGATCCAGCCGGAGGCTCTTCTCGTCCTGGTCAACCACTCTTCTCCTCTCATACAGCAGGGCGTCATGAAGGTCCTGGACGCCTACTTCAGCCGCGCTCAGAAAGAGCAGAAGGAGAAGTTCCTGAAGAATCATGGATTCTCACTGCTGGCCAATCAGCTGTTCCTGCACCAGGGTTCACAGGGCCTGCTGGAGTGTTTCCTGGAAATGCTGTTTGGCCGGCCGGTGGGGCTTGAGGAAGAGCTGGATCTGGAGGATATGGAGAACATCTCCCCGTTCAGGAAGCGTTGTATCATCCCTGTGCTGGGTCTGCTGGAGAACTCTCTGTATGAGAACTCGCTGGTGCACAACGGCCTGTGTCTGCTGCTGCAGCTCCTCAACGCCTGCCCAAAGCTGGCCGACATCCTCCTGGACCATGGCTTACTCTACGTGCTCTTTAACACACTGTCCACCCTCAACGGCCTGGAAAATGGGATTCCTCCGAATGACTACAAACTGGTGGTGTGTGACATTCAGCAGCTGTTGGTGGCCGTCACCATTCACTCCTGCAGCTCCTCGGGGTCTCAGTACTTCCGCATCATCGAAGACCTGATCACCCTGTTGGGCTACATGCAAACCAGCAAAGTTCGGCGCACACAGGGAATGGCCCTGGCCCTGCAGTTCCGCGTGATCCAGGCAGCCATTGATTTCATTAAGACCACGGCCAATCAGGACCCTCAGAAATCCAGCAGCTATGTGCACGTCCCCACCTCGCCACATCACGCTCTACAGCAGAAACGCAAAAGCATCGCAGGAGATGATGGCTGTATCAAAGCTCCAAAACAAAAGGTTGGTTAAGCATGTTAACATAAAGATATGACAAAGATTTTTGGTACACATTATCTTTAAGATGTCTAGTATTAATATATGAATTCATAATTATTCCGTTTTGTCGAGTGTGGTCATAGAATAGCAACAAAATACAGTGAATGAACTATCCAATTGCAGTTGTTAGGGAAGGCTGAACTAAAATGTCGCAATGACAAAGTGAATATTGCACTAAATTAAAAGGTCAAATGTTACAAATAAGTGACAGTATTGATGTTTTAAATACTGGTTACACTAATATAACAATGTTACAATAAAG

Function

GO:

id name namespace
GO:0007040 lysosome organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800674 lncRNA downstream 18720 1598754 ~ 1599172 (-) True G679897
TU800447 lncRNA downstream 28157 1574238 ~ 1589735 (-) True G679688
TU800459 lncRNA downstream 133748 1481788 ~ 1484144 (-) True G679700
TU800446 lncRNA downstream 184972 1431967 ~ 1432920 (-) True G679687
TU800460 lncRNA downstream 186152 1431485 ~ 1431740 (-) True G679701
TU800715 lncRNA upstream 108780 1735142 ~ 1735716 (-) False G679923
TU800718 lncRNA upstream 109038 1735400 ~ 1735716 (-) False G679923
TU800719 lncRNA upstream 109038 1735400 ~ 1735743 (-) False G679923
TU800713 lncRNA upstream 109075 1735437 ~ 1735743 (-) False G679923
TU800716 lncRNA upstream 109075 1735437 ~ 1735716 (-) True G679923
CI01180000_01612108_01616924.mRNA mRNA downstream 968 1612108 ~ 1616924 (-) True CI01180000_01612108_01616924
CI01180000_01592917_01610651.mRNA mRNA downstream 7241 1591909 ~ 1610651 (-) True CI01180000_01592917_01610651
CI01180000_01554271_01567480.mRNA mRNA downstream 50412 1553905 ~ 1567480 (-) True CI01180000_01554271_01567480
CI01180000_01500501_01503809.mRNA mRNA downstream 113646 1499645 ~ 1504246 (-) True CI01180000_01500501_01503809
CI01180000_01434206_01489145.mRNA mRNA downstream 128747 1433383 ~ 1489145 (-) True CI01180000_01434206_01489145
CI01180000_01630692_01655733.mRNA mRNA upstream 4330 1630692 ~ 1655733 (-) True CI01180000_01630692_01655733
CI01180000_01686505_01733648.mRNA mRNA upstream 60034 1686396 ~ 1733884 (-) True CI01180000_01686505_01733648
CI01180000_01758634_01764277.mRNA mRNA upstream 131738 1758100 ~ 1765794 (-) True CI01180000_01758634_01764277
CI01180000_01766530_01776010.mRNA mRNA upstream 139549 1765911 ~ 1776010 (-) True CI01180000_01766530_01776010
CI01180000_01776944_01781186.mRNA mRNA upstream 150510 1776872 ~ 1781186 (-) False CI01180000_01776944_01781186
TU800565 other downstream 447364 1169859 ~ 1170528 (-) True G679801
TU800690 other upstream 152230 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800691 other upstream 152230 1781450 ~ 1781488 (-) True G679907
TU801392 other upstream 989992 2616354 ~ 2616756 (-) True G680525
TU801369 other upstream 1144685 2771047 ~ 2851916 (-) True G680506
TU801372 other upstream 1360719 2987081 ~ 2993864 (-) False CI01180000_02988807_02995955

Expression Profile