CI01180000_05587131_05604001 (FAM21C)


Basic Information

Item Value
gene id CI01180000_05587131_05604001
gene name FAM21C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5587047 ~ 5605024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_05587131_05604001.mRNA
GATATATAATCTTATGAGTCATAATGTCCATTGCATCAGTAACATATTCAAGTAAAACTTGTGATCTTTTACAGATTAAACAAGCATGTCTAATTTTATGGAGAATGGCCCCAGTAATCATAATGGGGAGGCTGAGCAGGTGTGGGAGAGACCCTGGACAGTGGAAGAGATGCAGAAATCCAGCACAAACTGGTCACTGGCTGCAGATTCAGGGTTATTTCTTTTCCTGCAAGACTTCTCTCAAAGGATGCTGTCCAAGACGCATGAAATTGAAAAGCAGTTGGACGGTCTTATCCGGGACACTAAAGCCACAGACAGCCATCTACATACAGTGTTTAATGACTTCCTCATGCTGTCCAACACACAGTTCATTGAAAAGAGGGTTTATGATGAAGAGGTGGAAGACCCTGCACCAAAGCCAGAAACCACGGAGAGACAACCTGAACAGGAGAAGACAAGGGAACAGAAGGAAGCAGAACTTATTCCCAAAGTCCAAGAGGCCGTCAACTATGGCCTGAAGGTCCTGGAATCTGCTTTCGAACAGCTTGACATTAAAGCAGGAAACTCTGACTCTGAGGATGAAGAGGCTCTGGAAAAAGTAGAGCCCATTTTGGAAGCAAAGGATCTGTATGTGGACAGGCCTTTGCCATACTTGATTGGTTCCCAAGCCTTTATGGATCAGGAGGATGTTGGCCTGGGAGATCTATCCAGTGATGAAATGTCTGTCGGTAGTGACAGAGACAGCGTCATTGAGAGTGATATTGAAGATGATGATGAGCACTCAGATGAATATTCTGACCAGGATGAGGAAGTCCATGGCAGCTTTAAGAAGAAACCATCCATTGCTAGTTATGATGATGCTGATGAAGAGAATGAAGATGAAGATTCTGACATATTTGGAGGGTCTGATAAGGATGAAGATGAACTCAGAAAGGACACTAGTCTACCATCCTTTGCTGATGAACTAGCAGCCAGAATCAAGGGAGAGACTCCAAACAAGCCAGAAGCAGATCGCACAGCATTATCATCAGGCCCATCTATCACCCAGAAGAAGAGTAAAACAAAGAAAGAGCCAAAACCTCGGGTGGAAGATGATCAGGACGAGATGTTCAAACCACCAAAAATGGAAGATGAGGAATATTCTCCATTTGGTGGGAAGGGTGGTCTCTTTAGTGGAGGCAAAGGCCTGTTTGATGATGACGATGAGGGAGATCTGTTTTCTGATGCACCCAAAAATGAGCCAGTGGAAAAGGAAAAGACTGTAACACAGGCAACAGAGCCCCTTAAAACTAAGAAAATACCCACTGGTGCTGTCTCCATCTTTCCTGAAAACAAGAAACTTTTTGGCTCACCAAATGATTCAGAGTCACTAGAGAGTAAACACAATAAGAGTCCAGTGAAGCCCAAAGGGCAGGCAGCTCCAAAACGTGTCTCAGTTGGGGGACAAGAGAAGCAAATGCCAAAGAAAACAGTAGACCTGTTTGGGGAAGCTGATGAGGAGGAGGATGATGATGAAGATGGAACTATGTACAGTGGGAAAGCCAGTGCAGTTCCTCCACAGCAGGACAAAAGAACCGACGGGGAGGAGGAGACCCGTCCTCCAGAGAAAAAGCCTCCTGCTGGAGCCATTTCAATGTTTGGGCCTGGCACAAAAAATATACTGGAGGGTCTGAAGAAACGCCGACCTTCCACAAGTGAAGAGTCCGCCAAATCTGAAGAGAGTGGACCTCCACCTGAAGCAGTCAAATCTTCACCTGCTCTGGGAGCATCAGAGAAAGCACATAGCAAGAGTCTGTTCTCAGATGATGAAGACTCACAGATATTTCCAAGTGAGACTACAAGTAAATCAAAGCCTACCACTCAGAACAAACCCAGCAAAGCGCCGCTCTCAATATTTGATGATGAAGAAGAGGAGGACCTTTTTTCATCGACACCAAAGTCCAAGTCAGTTCAGGATCAGTGGATGAGCTCTAAACCCAGCAAAGAAAGCCCAGAAGTGAAGCCCAGTGGAATGAAGTCGAGCGTTAGCGCCCCCTCCAGGCTACCCAGTGTCAAAGCACCACAGAAAGATGGACTTTTTGATGATAATGAGGATGAAGATCTGTTTGCAGCCACAAATGAGTCTAGTAAGAAGTCATCTCAGAGAGTGTCTCTCCTGTTTGAGGATGAAGATGATGATGAGGACAAAGAACCTCTTTTTGGCTTCAAAACACCTGCAAATAAAACTCCTTCTGAACCGAAGGCTTCTGGTGTTCCCTCTCTGTTTGAATCTACGGAGGAGGATAATGTACCCAATGTAGCAAAAGATAAGATAGCAGAAGAGAAGACGTCTGTGGAGAAGAAGGCTGTGGAATCCATTCTGTCCTCTGACGACAGCACTGAGATTAAGAAGAAGCCGGTTGGAGCAGTTAGCCTTTTTGGTGGGATCGATATATTAGGAGAAAAGCAGGACACAAGTAAGGATCATGGGCCCCTCATGAAGAGCACAGGTGTGTTCCAAGATGAGGAACTCCTTTTCAGTCACACGCAACAGAAAGACAACGATCCTGATGTAGACCTCTTTGCCACATCTCCTAAACCAGCGGTGTCATCTCAGAGCTCTGTAAAAACAGCTGCCCCCACACTGTTTGGGGATGACGATGACGATGACCTCTTCGGTTCAGCAAAACCTAAAGCTCCTCCGAAAGTACCAGAGAAGCCCAGCAAGCCTAAAACGAATGAAATGGACAAATCCACACTGACATCAAGCAAGGCTGGGTTAGCTGTCAACCCTGCCAGCCTTCTGCCAGGCGCGGTGCCACGTATTCCAGGAGCTGTCAGCGTAATCCCTGGCATGGCACCCACTTCCCTCTCTGCAGCTGCCAGGCCGCTGCCAGCTACTGATACGATCCCTGATAAACAGGCCTCCAGTGAGGGAGGTGTGAGCTTTGACTCGCCCGTTCAGGTCAGCACGCTACAGAATGCTAACAAGGGTCGGGCTAAAGGCGCAGTGCAACGGCGACCGCAGACAAGGGCAGCAAGACATTTTGCAGCCCAGCAATCAGAGGAAGATGTTGGGGAGAGCACCTCTTCACAAGCTAATGAACCAGTTATGGCTGCTTCACTCCCTGCCTTTAACCCCGTTTCGGTGCGACCCTCAGCGCTCACTATACCCATCAGCACCCCCGCTGCAGCCAAGAGCCCAGATGAAGCAGTCAGGCCAAAGAGATTTCTCGATTCTGCAGATGATCTGTTTGATTCGGATGATCTCTTTGCCACAAAGCCTGTTCCCTCCTCTAAACACAAAGCAAAGACCCCTGAAGAGGGCCAAAAGAAAGCCTCTAAGACAGAGGCCGTCATAACCTCAAAGAAAGACCAGGCCTCGTCTATTTTTGACAGCCATGAGGATGATCTTTTTGCCACAGTGAAACCGAAGCCTGTCCAGAAAGCCAAACACATGTCCTTCCTAGATGATGACGATGATGATATTTTTGGAGCAGGAAAGGGTAAAAGTACAGATAATAAAAACTCCAAAACAGAGGCCAGTCCTGCAAAACCAGACATTTTCCAGGATGAAGTGAAAGAGCCCCCCAAGGGCCAGAAGAAGCCTAAGGAAGTGTCTTTGGATGCAAGTTTGTTTGATGATGTTGATATTTTTGCTGACTTGACTGGTACCACAAAGCCAAAGGAGAAGAAAGCAAAGAAGAAAGTGGAGACAAAATCTATATTCGACGATGACATGGATGACATCTTCTCGGCTGGGACTACAAAACCAACGGTAAAGCCATCCTCCAAGTCTAAGAAGAGCCAACCCGCCCAGGATCCCATCTCAACTGCGGAAACAGGCCACAGTATTTTCGATGATCCCTTGAATGCGTTTGGGGGAAACTGAGTCTCTTTCATAACAGCTATTTGTTTAACTCTGTAGCGAAGTTCATGGCCTAAATGAAGGTAGATGTAATCTAACACTGTTGTTAATAATGTAAACTCTTATAGGTAACTTTTACAACAACAACAACAAAAAAAATTAGGAAAAAAGCAGATTGTAAGTCTGTTTACCTCTAATACCATCTGTGAAGTCATCTGATTGGTAAATGATGTAGCGGTCATCAATTGGCATTGACATCTGCAACGGTTATTGTGTCTTTTATTAGCACTTTAAACATGAGAATTGTCTGGTAAGGTATAAAAGATGTGTGGATTAAGACTGGAGACATTCCTCTGATATTGTCAACTGTATGGTTTAATTTTCAAATGTGGTGCCATTACTCTAAGCCTATGCGCCAACATAAGTGCTTTTGTTGTTGATGTTTTTATAACTTGAGCTGAAGTTTTCTTGTGTTGCATGTGAAATGATTTTTGGAAACTAAAGAAAATATATTTTATGAAACGTACTCTTGAGTGTGAGTGCTGGAATTCAAACACATTTTTAGAGGACAAAACCATTGCTTTTCTTAATTTAAAATCTTCAAAGACCGCAATGTTATACATAGAAAATGGAACCAGATACAGCCACAAAGTGTTGTTTGACGCTGCCAGGGTGACCGGGGTAACATCCGGGAGATGGGAAGAGGAGTCGCGAGAATTGTCCCGCCCACTCTGCGTTACCATTGGACGAGTGACTCTCTTTTTCTGCAACGGCTAATATCATTCGTTCTCGTCATTGTCAATCAAGAACATCACAATAGGCTGCCTCCTTTTCAGTTTTTTTTTTGTATTCTGTCTTAATGGGGCCTTTGAGCCTTATAACATAGGAACAAAAGCAATTGTTCGTGGCTCGAAAAAAATAAGGAATCGTTTTGGCGTGCAGAAACGGCAAAGGTGGAGGAGGAATTTGTAAGCATCAACGGCATCCGTGAGTAGTTCGGTGGGCTGCCTGTGCTGCTTTGCTAAACCAGCTAGCCGCTGAAACAG

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K18462 FAM21; WASH complex subunit FAM21

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_05587131_05604001.mRNA True 4893 mRNA 0.45 29 5587047 5605024

Neighbor

gene id symbol gene type direction distance location
CI01180000_05566677_05569815 ALOX5, ALOX5A coding upstream 17193 5566677 ~ 5569854 (+)
CI01180000_05552106_05558265 SLC25A16 coding upstream 27972 5551875 ~ 5559075 (+)
CI01180000_05460865_05464029 NA coding upstream 122514 5460865 ~ 5464533 (+)
CI01180000_05361478_05362402 NA coding upstream 224541 5361299 ~ 5362506 (+)
CI01180000_05307085_05313251 MAT1A coding upstream 273658 5306869 ~ 5313389 (+)
CI01180000_05605783_05625064 ZFAND4 coding downstream 759 5605783 ~ 5626277 (+)
CI01180000_05721160_05745421 MARCH8 coding downstream 116076 5721100 ~ 5745673 (+)
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding downstream 146532 5751556 ~ 5758136 (+)
CI01180000_05875768_05878028 NA coding downstream 270045 5875069 ~ 5878719 (+)
CI01180000_05919195_05919836 NA coding downstream 313081 5918105 ~ 5920447 (+)
G681426 NA non-coding upstream 3327 5583517 ~ 5583720 (+)
G681425 NA non-coding upstream 3680 5583100 ~ 5583367 (+)
G681269 NA non-coding upstream 54955 5526957 ~ 5532092 (+)
G681405 NA non-coding upstream 65688 5520237 ~ 5521359 (+)
G681227 NA non-coding upstream 84917 5499664 ~ 5502130 (+)
G681249 NA non-coding downstream 26075 5631099 ~ 5639384 (+)
G681242 NA non-coding downstream 57164 5662188 ~ 5666144 (+)
G681254 NA non-coding downstream 63968 5668992 ~ 5681405 (+)
G681205 NA non-coding downstream 167750 5772774 ~ 5780374 (+)
G681268 NA other upstream 213285 5370410 ~ 5373762 (+)
G681137 NA other upstream 801416 4783305 ~ 4785631 (+)
G680736 NA other upstream 1802606 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2014650 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 2891611 2689271 ~ 2693221 (+)
G681592 NA other downstream 868011 6471995 ~ 6478999 (+)
G681686 NA other downstream 1027884 6632908 ~ 6634989 (+)
G681667 NA other downstream 1050822 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1798123 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 2058399 7694529 ~ 7695667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006545 washc2c coding NC_007124.7 CM002897.2 18073211 ~ 18122333 (-)
mexican tetra (Astyanax mexicanus) G218654 fam21c,LOC107678570,LOC107589565 non-coding NC_035921.1 CM008324.1 23709584 ~ 23714345 (+)