CI01180000_05928275_05933064


Basic Information

Item Value
gene id CI01180000_05928275_05933064
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5927492 ~ 5945665 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_05928275_05933064.mRNA
GGAATCATATAACACACCTAGCAGTAATTACGTGCCCGACGTGGCTGTGTGTGGATATGATTTTTCTCTGTGGACGTTCATGGGTGTGTTGTTGGGTAAAGCATGCGCTGCCCGAAGACGTGGGAAAAGGTTTAGTGGCCTGGAAACGCACAAATGTACGTTAAATATGGACAGAGTCATTGAGCTCACTCTTGTTCACAGGAGTTCATCAGTCAAACTCATCAGCAAATTATATACACAATTACAGATTACCAGCGTTATGAGAATGAAGGAACGTAGTGTAAAAGTGGCCATTTTGATGTCCCGGATAAAAGGGGCACAATGCGTAATGGCAGCCCGTTACGCCCTCGCCAGGCCTGCGCGAGCACCCTGTTCTGCACTGACTCCTGCTGGGAGATGTGGGGCACGTATTGGCCCTGAGTTCACCCAGCTGTTCTTTGTCACTCCTCACACGCCTCCGCACTCCTCTTCCCCAGATCTGTGCTTTGCTAGGGCGCGTCTCCTCTTTCCTGTCGGGTGACGGCTTTACTGGAATTGGTTTGAAGAGTGGGATCTTGCAGCTCCAACTGGAGCATGGGTAACTATGCCACGTTAGTGCCAGTTGTCATTACAACAAGATAAACTTTGTCAGATATTTTTCTTGTACTTTTCATGTACTGATTGAACTGGATCATCTTAGCATGCCATCACACATCTTACACCGTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_05928275_05933064.mRNA False 707 mRNA 0.48 4 5928275 5933252

Neighbor

gene id symbol gene type direction distance location
CI01180000_05919195_05919836 NA coding upstream 7828 5918105 ~ 5920447 (+)
CI01180000_05875768_05878028 NA coding upstream 49556 5875069 ~ 5878719 (+)
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding upstream 170139 5751556 ~ 5758136 (+)
CI01180000_05721160_05745421 MARCH8 coding upstream 182602 5721100 ~ 5745673 (+)
CI01180000_05605783_05625064 ZFAND4 coding upstream 303164 5605783 ~ 5626277 (+)
CI01180000_06060886_06073483 NA coding downstream 126129 6059381 ~ 6074222 (+)
CI01180000_06183820_06187700 NA coding downstream 248897 6182149 ~ 6187901 (+)
CI01180000_06369051_06375352 NA coding downstream 435129 6368381 ~ 6377253 (+)
CI01180000_06503211_06517041 NA coding downstream 569959 6503211 ~ 6517102 (+)
CI01180000_06532667_06556697 VWC2 coding downstream 599024 6532276 ~ 6557504 (+)
G681459 NA non-coding upstream 81393 5846662 ~ 5846882 (+)
G681451 NA non-coding upstream 97184 5830647 ~ 5831091 (+)
G681440 NA non-coding upstream 125352 5802712 ~ 5802923 (+)
G681428 NA non-coding upstream 144361 5783648 ~ 5783914 (+)
G681205 NA non-coding upstream 147901 5772774 ~ 5780374 (+)
G681506 NA non-coding downstream 246420 6179672 ~ 6179921 (+)
G681521 NA non-coding downstream 273840 6207092 ~ 6208009 (+)
G681537 NA non-coding downstream 325557 6258809 ~ 6262932 (+)
G681540 NA non-coding downstream 336898 6270150 ~ 6383813 (+)
G681606 NA non-coding downstream 464266 6397518 ~ 6403932 (+)
G681268 NA other upstream 554513 5370410 ~ 5373762 (+)
G681137 NA other upstream 1142644 4783305 ~ 4785631 (+)
G680736 NA other upstream 2143834 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2355878 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3232839 2689271 ~ 2693221 (+)
G681592 NA other downstream 539783 6471995 ~ 6478999 (+)
G681686 NA other downstream 699656 6632908 ~ 6634989 (+)
G681667 NA other downstream 722594 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1469895 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1730171 7694529 ~ 7695667 (+)

Expression


Co-expression Network