CI01180000_06060886_06073483


Basic Information

Item Value
gene id CI01180000_06060886_06073483
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6059381 ~ 6074222 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_06060886_06073483.mRNA
TGTATAAATCACCATCTACTTTCCTTGTTTGTAAAGCAGAAGCTTGAACAAATTGCTCAAGAACAGAATAAATAAAGAGCTGGAACAACATGAGGATGAGTAAATTCCGATATTTTTTTGGCCGCACCATTCCTTTAAGTGACCTTTTGTTATCTCTTCTTATAATCCGCTATTTAAGACTAATTAAATACTTTTTATTCATATCGATTTATTCATGGAACCCCATGTGTTGTTTTTTTTCTTTATCTCCAAAACACTAGCATTTAGCTCTTTATATAACTATTTGTTATTTATATGTGTAATACGCAGTACTGTAATGATAGTGTTGTTAAATGGAGCCAAATTATGCACTGCAGGTTTGTGAATATCCACGTAAATAACAAACCAAAATGTACATTATATATTGGAAGAAAATCACCCAACCAGTGGGCGTCCCCATTAAAACTGCAGGATGACTGCTCCATAAGCCTTTAACACGTGTAAATTGCAACATAGCTGAAACCCATTTCCTTACACATGTGATCTGTAAATTGCTGCCACCCTAGGGCTGGTGACATGTTTGATGTCAGGCGGGGTGGAGGGGCTGAGATTAAGCCAGATAATGGTTGCCTAATACTGCCAAACTGAAGATTTATAGTGCTGCTGCATCCGAAGCATCATGTTTTTGAAGATTGAAAACAGAATTGCATGCAGGTTGAAGGTAGGAGTGCATCTAAGCTCCTTTGGCACATATATTCTGCATGAAGCTGGTGTCAAGATCATATTCAAGGTTGTAAAGTTGATTAAAAAAAACTCTGAGAATGACACAATAGGCAGATGTGGCGTTCTACCTCACATTTATCACAACTGCAGATCATCCTCGGAAAAATAGTTGATTCACTCATTTTCTCTGTGCGATGAGTTTGTCATGTCCTCTGATGGACAGCTTTGCGGTGTCACATGCATTTTTTTTTCTTTCTTCGTGTTTTTTTTTACATTTATTAAAACCAGTCCAATCCCTGTTTTTACAGCCCCGCTTCCCTCTTTCATTCATTATAGTTTCTTATCTTGGCAGGCAATCAGAACTGCCAGGCAGCCAGTCCATTATGCACATATGAAGCCCATCACTCCAACCGGATTGGCCAATTCATCAAACATTTATCTTTTGCCCTGTGAACAGCGTGTCAATTTGCCTGTCACTCCCAAGCCTTCGCAGCCTCTTCGAAATAAAAACATTACTTTTCCTGCACCGGAGGACGCTTTGATGTTAAATCTCCCCTCTTAACTTTAAAACAAGGCCTGAAGTCTGATTCCAATCCTCACACAGGCAAAGATCCCAAACAATGGGATTCGGGCAGCCATCCGCTGTTGACCATACTTTGAGACCGAGCTGTGGTGCTGGTTGCAGATCAGCTGGTATATATGTACGATCTAGAACACCCGTGGCTGTTCTGGGACCCAGTTTTGGCTTCAGACACATGGGTGACACTGTGGAGCTGAGGATATGAGAGAGACTAATATCAAAGGATGATCAGAGCTGTTCTGTCAAGAACAGACACACTGGGGACTCAAAAAAGAGAGCAGAGAAGAGAAAGGCCTTTTAAAACCGGCGAGCAAACAAGGGAATTATTGGCCATAGCAAAGGGAAATATCAAAGCTGGGAGTATCATACAGAAGGAGGCTTTTGCTGAATGGGATCACTGCTGGAACGCAGACTCGGAATACAAAGGCAGGATCAGACGGCGCTCTCTGCATTGTGCTATTCTGTCATTGTGGTGTGACTTTGAAGATGGTGGTGAAAATGTGCAGTCAGTTTTGGATTCCCCATGGGGACGAGCCCATAAAATTTCATCAGCCATGTTCTACATGATAAGAGCGAGGTCACTGACAGGCCTGAAAGCGTTCAGCCAACTGGAAGAGCTGATTGTGGACAACAATCTTCTCGGAAATGACCTCCGGTTGCCCAGCTCTCCTCCGACAGAGTGTCAGCAGCTCAGACCCGAATTCTGCTGTGAAGTGGCCCTGCTGGAGCATTTGGTGGAAGTGACGCCGGCCCTGGAATACCTAAGCCTTCTGGGAAACGAGGCCTGTCCCAACCAGCTGGTCAGCATGGATAAAGATGAAGACGACTATCAGAGATACAGGTACTTTGTACTACATAAGCTGCCAAATCTGAAGTTCCTGGACACCAGGAGAGTGACCCAGTGCGAGCGGTCAGAGGCCGAAGCACGTGGAGCTTTCATGAAGGTGGTCAAGCCAAAAAATGACCAGATAACTATAAGAACTTAAAAGGCTAAGGCACCGTAAGCTAATCCATCCCACTCCTTCTTAGCTTCCATTGTTTGTTCGTAGCAAATTGTCAGAATCTCTTAAGAGGTTACTTGTACGCAGCTCTTTGAAGACGTGCCCTTTCAATCTCGCCTGGCTGTTTAGAGGAGGGTCTTTTTAATGACCACGACCTGACCTCTTTCCGTATGCATGAGCCCAGATCAAAGTGGACGGCGCCTGTCCGATCGGCCTTGCTTCGCACGGCGTGACAGCGCTCTCGATCGGAGTGACAGCTCACGTTCACGACAGTCACCATCGCTTAATTATCCATCGCACACACAATTATTTCTCTCTCCGACTTGCGTTTGAAGGAGGCAGGCAGAGTCCTAATCTTCAAACACATCTCCATTCTTTTCTCTTCTAGAGTTTATGAAGAAATGGCTTTAGTAAGATTTGATTTCATGTAATTGTACAGTCATTAAATATTTAGCTTGTGGTTGAACCTGGTCTTGTCTTTGCTACTTCCCAAGAGCCATGGATTAGTAAAGCAAATATGGATGTGGATGCTCATGTGATTCGATGCAGAGTTTAAAAGAAGAGAAAGAACAGAGTATTTCTCATAGTCAACATTTAGACGATAGTGACGCTGAAGTCACTTTTTTGAAAACCATGCAATGAGTTAACCTTGTTCAGGCATGTTTTTAGTTTGGAGGAGATTTTGTTGGTTGGAAAATGAGAAAAGATGACTGTAAAGTGGAA

Function

NR:

description
hypothetical protein cypCar_00027311

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_06060886_06073483.mRNA True 3006 mRNA 0.43 8 6059381 6074222

Neighbor

gene id symbol gene type direction distance location
CI01180000_05928275_05933064 NA coding upstream 126129 5927492 ~ 5945665 (+)
CI01180000_05919195_05919836 NA coding upstream 138934 5918105 ~ 5920447 (+)
CI01180000_05875768_05878028 NA coding upstream 180662 5875069 ~ 5878719 (+)
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding upstream 301245 5751556 ~ 5758136 (+)
CI01180000_05721160_05745421 MARCH8 coding upstream 313708 5721100 ~ 5745673 (+)
CI01180000_06183820_06187700 NA coding downstream 107927 6182149 ~ 6187901 (+)
CI01180000_06369051_06375352 NA coding downstream 294159 6368381 ~ 6377253 (+)
CI01180000_06503211_06517041 NA coding downstream 428989 6503211 ~ 6517102 (+)
CI01180000_06532667_06556697 VWC2 coding downstream 458054 6532276 ~ 6557504 (+)
CI01180000_06581704_06589445 NA coding downstream 506768 6580990 ~ 6589481 (+)
G681459 NA non-coding upstream 212499 5846662 ~ 5846882 (+)
G681451 NA non-coding upstream 228290 5830647 ~ 5831091 (+)
G681440 NA non-coding upstream 256458 5802712 ~ 5802923 (+)
G681428 NA non-coding upstream 275467 5783648 ~ 5783914 (+)
G681506 NA non-coding downstream 105450 6179672 ~ 6179921 (+)
G681521 NA non-coding downstream 132870 6207092 ~ 6208009 (+)
G681537 NA non-coding downstream 184587 6258809 ~ 6262932 (+)
G681540 NA non-coding downstream 195928 6270150 ~ 6383813 (+)
G681606 NA non-coding downstream 323296 6397518 ~ 6403932 (+)
G681268 NA other upstream 685619 5370410 ~ 5373762 (+)
G681137 NA other upstream 1273750 4783305 ~ 4785631 (+)
G680736 NA other upstream 2274940 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2486984 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3363945 2689271 ~ 2693221 (+)
G681592 NA other downstream 398813 6471995 ~ 6478999 (+)
G681686 NA other downstream 558686 6632908 ~ 6634989 (+)
G681667 NA other downstream 581624 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1328925 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1589201 7694529 ~ 7695667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding CM030139.1 CM030139.1 8958739 ~ 8960425 (+)