CI01180000_10785561_10788308


Basic Information

Item Value
gene id CI01180000_10785561_10788308
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 10784787 ~ 10789157 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_10785561_10788308.mRNA
CAGGCATGCATACAAACTCTCTTGCTCATCAGCACGGCATCACAGGACTCTTCAGGGGATGCGCTATCCTCAGAGCAATATTCTCTCTTTGCTGAGATCTCAAACTGTGAAACAGCTCTGCCGTGTTCAATCAAAGGAAGCCCTGACATAAGATGGAAAAGACACAGCTGTCAGTTAGTGTATGGCAGCGTAATGCATTTGGTGCTGGTCTATCAATTGTTGAATTAAGAGAAAATTGTCATTTTCTTGTTGTCTTCATATGAAACGGCTCATATTATGCATTAAGACTTTGATGCCGTTGAAATTGTCTGCTAAGAAGCGCTTCCTCTGTTGTAGTCATTGAGGTATTGCCATTCAATAAAGCTCAACGGTGCCTTTGGCAGAAAGAGATGTAACACTCTAAATTCACAGCAATCTCATTTTCATTACAGTCTTAATGTGCTTATGTGCACCTGCTGTACACAATAATTCTTCTCCTGTGATAAACACCTCATAGATACTACATAAATAATTGTCAATATTTCCTGATCTCACAGGAAAATGTAACTATATTATGTGGTGGCGTTTTCGCATGAATCTGTTTAATGTGAATCGTACAAAAACGGACAATTATTAGAAAAAAAAAGTATGCATGAAGGTCCACCCCTAACCTCACTCCTGAAACCCTATGACACCAGGTTGTCCAAATGAAGGTCAAAGGGATGACCCTTTCAGCTATTGCATGAGAAGCTGGTCGTTCCAAATCTGTAATTTCTAGAATATTGAAGCTTTACAAAGACACTAATTCATTCAAGTCCTCCAAAAAGGCTGGTCGTCCACGTAAGACCAACGCATGAGAGGAGAGGACAATGTGGAGACTTTCAATGGGCAATCGGTTCAAAACTGAAGCTGGAATTGCTCGCCAGTTCAGAGCTGAACATGGTAAGGATCTGTCTCGGCATACAGGGTCTCGTCGTTTAAGAGAATTTGGACTGAAAGCTCACTCTGCAGTGACCAAGCCTCTCATCAGCAGAAAGAATCAAAAGGCTAGACTAACCTTTGCTGAGGAGCATGTTGTGTGGACAGAGGAGAACTGGTCCAAAGATCACTTTAATTTATTTGGGTCAGATGGGAAACATTATGTTCGGCGTCAAACTGGGGAAAGATTGAACCCAAAATGTGTAAAGAAGTCAGTGAAAGGTGGAGGAGAAAGCGTCATAGTTTGGGGGATGTTTTCTGCTGCAGGAGTTGGGCCTGTTATACAGGTACATGTCAAGGTGAATGCAAATGTTTATCAGAACCTCCTTCTACAACATGTGGTTCCTTCACTGCGAGCATCTCCCAATCAGCCCGCAGTTTTCATGCAAGACAATGCCCCCTTGTCACAATGCAAAACAGGTACCGAACTGTGGAAGAGACTGGAAGAAGAGTGGACCAAGATCACACCAGAGCAGTGTGAGAATCTAGTGACGTCCTGTGGCCGCAGATGTGCTGAGGGCATTCAAAGCAATGGCCTCTACACTTCCTACTTATTTTTTGACTGCTGGGAGTCCGAATCTGGCCACTCCGAGGTACAAGGAATCATCCCAGTTAGCGAGTTGGCCGCTTATAACCAAGGAGGTCATAACTGCAGGGCAGAGACTGCAAGCTCGGGGGCTCGGCTGGTGCCTTCATGCAAACAAACCACCTCCAAACCACTTTCACACTCTGGAACCAGTGAGCCGAGCGAAATTGGTTCCGTTAGGAACAGCAAAGAGACGAATGAGAGGGTGGCGGTGTGGTGCTGAAGTCCAACAGACCAGGTACCCACAACAGCCCAGATACGTTTAGAATGCTTCATCCAGCCACAGAAGGAATCATAGAGGCGTGTACATGTTGTATACGTACTCACATTTTGTATTGTAACTAGCTTCCATCTCAGTTAATTTTTCTGTAGAGTTGTTGGCTTGGCCACCAACACTTGATCTGAGTAGCTTGCCCAACACTGCCGGTTTGTTGATTTTACACCCAGGAATCGAGGATTTGGCAACCCAGGAAAGTTAAATGTCCCAAGAATCAATTAAGCACTGTAATCCACACAATCCTGTTGGTGGGGAGTAACTCTACATCACCCATATTATGAAGCTTGAACAATCTCACAGTAGTGGAGTTAGAATCTAGCCACTCCGAGGTACAAGAAATCATCCCACTTAGCAAGTGAGTTGGCCGCTGATAACCAAGGAGGTCATAACTGCAGGGCAGAGACTGCAAGCTCGGGGGCTCGGCCGGTGCCTTCATGCACGCAAACCACTTTCACGCTCTGGAACCAGTGAGCCGAGCGAAATTGGTTCCGTCAGGAATGGCAGCGAGACGAATAGGATGGTGCCGGTGTGGTGCTGAAGTCCAACAGACCAGGAACCTGCAACAGCCCAGAGACGTTTAGAAAGCTGCATCCAGACACAGAAGGAATCAAAAAGCTATGCATGTACTGTATACATACTCACTCCGTAGCTTCCTTTACCAAACTGACGTTTCCTTTTCCTAGCCTGTAGGCTGACGCCCTCCCTGCATTGGGGAATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_10785561_10788308.mRNA True 2541 mRNA 0.46 3 10784787 10789157

Neighbor

gene id symbol gene type direction distance location
CI01180000_10538157_10538596 NA coding downstream 246191 10537077 ~ 10538596 (-)
CI01180000_10521190_10523609 GFRA1A coding downstream 261162 10520833 ~ 10523625 (-)
CI01180000_10449079_10461033 NA coding downstream 323754 10448988 ~ 10461033 (-)
CI01180000_10441696_10442635 NA coding downstream 342121 10441647 ~ 10442666 (-)
CI01180000_10373880_10377493 NA coding downstream 406051 10373030 ~ 10378736 (-)
CI01180000_11077923_11087065 TSN14, TSPAN14 coding upstream 288766 11077923 ~ 11087736 (-)
CI01180000_11091600_11093609 NA coding upstream 302165 11091322 ~ 11093690 (-)
CI01180000_11098239_11100667 ELOVL6L coding upstream 308579 11097736 ~ 11100667 (-)
CI01180000_11106711_11107109 SPRN coding upstream 317309 11106466 ~ 11107894 (-)
CI01180000_11111159_11112550 NA coding upstream 321644 11110801 ~ 11112550 (-)
G685834 NA non-coding downstream 10923 10773477 ~ 10773864 (-)
G685788 NA non-coding downstream 74754 10709583 ~ 10710033 (-)
G685746 NA non-coding downstream 158003 10626300 ~ 10626784 (-)
G685743 NA non-coding downstream 165045 10619499 ~ 10619742 (-)
G685730 NA non-coding downstream 185903 10598660 ~ 10598884 (-)
G685908 NA non-coding upstream 100446 10889603 ~ 10890254 (-)
G685923 NA non-coding upstream 137272 10926429 ~ 10996548 (-)
G685937 NA non-coding upstream 163277 10952434 ~ 10970182 (-)
G685953 NA non-coding upstream 191091 10980248 ~ 10983846 (-)
G685961 NA non-coding upstream 217901 11007058 ~ 11007317 (-)
G684929 NA other downstream 883399 9895316 ~ 9901388 (-)
G684493 NA other downstream 2060920 8722693 ~ 8723867 (-)
G684182 NA other downstream 2873579 7910761 ~ 7911208 (-)
G684080 NA other downstream 3201984 7579404 ~ 7582803 (-)
G684071 NA other downstream 3259133 7506890 ~ 7525654 (-)
G686052 NA other upstream 552459 11341616 ~ 11343496 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G317139 NA non-coding NC_047615.1 CM018561.1 8938718 ~ 8942335 (+)