CI01180000_11077923_11087065 (TSN14, TSPAN14)


Basic Information

Item Value
gene id CI01180000_11077923_11087065
gene name TSN14, TSPAN14
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 11077923 ~ 11087736 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_11077923_11087065.mRNA
TGAGAAACTTGACCACATGGGAGATTTGCGGACATTTTGGGATGAAATTTACCACCCCGTCACGGTTTTTTGACGGGGTGGAGAAGATGCACTATTACAGATATGAAAATGCAGAGGTCAGCTGTTGCTACAAATACCTCATGTTCAGCTACAACATTATCTTTTGGGTAGCTGGAACAGCATTCATTGCAATTGGCTTCTGGGCCTGGAGTGAAAAGGGTGTTTTATCAGATCTGACACAAGTCACACGTCTACATGGTTTTGACCCAGTTTGGGGAGTGCTTGTTGTAGGCACAGTCACTTTCGTTTTGGGATTTGCTGGGTGTGTCGGAGCACTCCGGGAAAACATCTGCCTCCTTAAATTTGTCTCTGGAGTTATTGGCTTCATCTTCTTCCTGGAGCTGACGGCTGCGGTATTGGCATTTGTGTTCCAGGGCCAAGTTAGGGAGTGGGTCAACGAATTCTTCTTGGCCAATGTGAAGGCTTACAGGGAAGACATTGACCTGCAGAATCTGATAGACTCTCTCCAGAAGCTGGATCATTGCTGTGGAGCTAAAGACCCCAACGACTGGAATCTGAATGTGTATTTTAACTGCTCAGACAGTAACCTCAGCAGAGAGAGATGTGGAGTGCCTTTTTCCTGCTGCATCAGCGACCCTGCTGATACAGTGGTGAACACGCAGTGTGGATATGATGTTAGATCAGGCACAACGG

Function

symbol description
tspan14 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN14 (tetraspanin 14).

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process

KEGG:

id description
K17296 TSPAN14; tetraspanin-14

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_11077923_11087065.mRNA False 714 mRNA 0.47 7 11077923 11087065

Neighbor

gene id symbol gene type direction distance location
CI01180000_10785561_10788308 NA coding downstream 288766 10784787 ~ 10789157 (-)
CI01180000_10538157_10538596 NA coding downstream 539327 10537077 ~ 10538596 (-)
CI01180000_10521190_10523609 GFRA1A coding downstream 554298 10520833 ~ 10523625 (-)
CI01180000_10449079_10461033 NA coding downstream 616890 10448988 ~ 10461033 (-)
CI01180000_10441696_10442635 NA coding downstream 635257 10441647 ~ 10442666 (-)
CI01180000_11091600_11093609 NA coding upstream 4257 11091322 ~ 11093690 (-)
CI01180000_11098239_11100667 ELOVL6L coding upstream 10671 11097736 ~ 11100667 (-)
CI01180000_11106711_11107109 SPRN coding upstream 19401 11106466 ~ 11107894 (-)
CI01180000_11111159_11112550 NA coding upstream 23736 11110801 ~ 11112550 (-)
CI01180000_11127163_11138849 NA coding upstream 39252 11126317 ~ 11138849 (-)
G685961 NA non-coding downstream 70606 11007058 ~ 11007317 (-)
G685923 NA non-coding downstream 81375 10926429 ~ 10996548 (-)
G685953 NA non-coding downstream 94077 10980248 ~ 10983846 (-)
G685937 NA non-coding downstream 107741 10952434 ~ 10970182 (-)
G685908 NA non-coding downstream 187669 10889603 ~ 10890254 (-)
G686008 NA non-coding upstream 34876 11121941 ~ 11122961 (-)
G686010 NA non-coding upstream 56585 11143650 ~ 11143855 (-)
G686014 NA non-coding upstream 61486 11148551 ~ 11148765 (-)
G685993 NA non-coding upstream 66294 11153359 ~ 11156481 (-)
G686034 NA non-coding upstream 92172 11179237 ~ 11180974 (-)
G684929 NA other downstream 1176535 9895316 ~ 9901388 (-)
G684493 NA other downstream 2354056 8722693 ~ 8723867 (-)
G684182 NA other downstream 3166715 7910761 ~ 7911208 (-)
G684080 NA other downstream 3495120 7579404 ~ 7582803 (-)
G684071 NA other downstream 3552269 7506890 ~ 7525654 (-)
G686052 NA other upstream 254551 11341616 ~ 11343496 (-)
G685987 NA non-coding downstream 103 11086625 ~ 11086950 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006571 tspan14 coding NC_007124.7 CM002897.2 21638454 ~ 21650404 (-)
bowfin (Amia calva) AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding CM030139.1 CM030139.1 15288624 ~ 15301140 (+)