G317139


Basic Information

Item Value
gene id G317139
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8938718 ~ 8942335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375617
actgagagccaggccttctcgaccaacatcagtgtgtgacctcaccaatgcgcttttggaagaatggtcaaaaattcctataaacacactcctcaaccttgtggacagccttcccagaagagttgaagccgtaatagctgcaaaaggtggaccgacatcatattgaaccctatgggttaggaatgggatggcacttaagttcatatgtgagtcaaggcaggtgactgaatacttttggtaatatagtgtacctaCCAGTTATTGGTGTTAATCTGGCACCTGGTgctaatttctttaattatctgACAAACCCTATTTAACTGGCAGCATAAGTTTCCAGTTTTCACTGACTTTGCAAGATGGTGAGCCATTCTAAAGTGACTGAAACCCTCTGGCAGCAGGTTGTCCAGATGAAGGCCAAAGGGATGACCCTTTCAGCCATAGCAAGAGAAGTTGGTCATTCAAAATATGTGATTTCTAGAATATTCTATCTTTACATCACCACAAACTCATTCAAGTCCCCCAAGAAGCCTGGTCGTCCATGAAAGACAAATGCAAGAGAGGACAGGATAATGCGGAGAATCTCAATGGGCAATCGGTTCAACACTGCTGCTGGGATTGCTCACCAGTTCAGAGCTGAACAGAGTAAGGATCTGTCTTGTCATACAGTGTCTCTCGATGTTTAAGAGAATTTGGACTGAAAGCCCACTCTGCAGTGACCAAATCTCTCATTAGCAGAAAGAATCAAAAGGCTAGACTAACCTTTGTTGAGGAACATGTTGTGTGGACAGAGGAGAACTGGTCCAAAGTTTACTTTAGTGATGAAagcaagtttaatttatttgggTCAGATGGGAAACATTATGTTCGTCGTCAAACTGGGGACAGACTGATGTCCCAATGTGTGTAGTCAGTGAAAGGTGGAGGGGTAAGTGTATGGTTTGGGGGATGTTTTCTGCAGCAGGAGTTGGGCCTCTTATGCAGCTACATGGCAGAGTGAATGCAAATGTTTATCAGACTCTTCTTCAACAACATGCGGTTCCTTCCCTGCGTTCATCACCCAATCAGCCAATGCTGCCTGTCATACAGCAAAATGGGTAAAGCAGTTCCTTGAagctgaaaacactgaaataatgaaatggcCAGCCCAATCTAAACCCAATAGAAAACCTCTGGAAAATCCTTGGCGACAAAGTTATGGCCAAGAAACCCACTACAGTCACCGAACTGTGGAAGAGACTGGAAGAAGAGTGGACCAAAATCACACCAGAGCAGTGTGAGAGACTAGTGACGTCCTGTGGCTGCAGATGTGCTGAAGTCATTCAAAGCAAGGGCCTGTACAATTCCTAATAATTGTTGACTTGTAACCTTTTGAAATTTTAGTTGTAATCTTTCTCCGTGCTACAGTCATTGCTGTTCTCTAATTTCGATCATTGTGTTTTCTACAAAATAAAGGTTTTTTGTTGAAGTGCCTTGGTTATTTTGTAAAACACTGTTCTATTAGCATGGCATAGCCACAACAAAAATTCCTTCAAATGTTGAGCAATGAAGATTACATTATTCCTGAAAAAATCAAGTGTTCATAAATTGTTCTATAATTTTGATCTCCACTGTATAGCACAACAGAGAAGTGGGCAGTCCTCACATCTGTTGGGACAGGCCTTAACCCTCTGTTCAGACCATATTCTGCTCCAGTGGTCCACCACATGAAGGATGTCAACGTGTGGATCACTttttggtatctggcacttcagccatttAGGTTCAGGGTGATCCACAGGCTGGGGGTGCAGATAGCTGTGGCGGATTTTCTCTCTTGCTGGGGGAGGAGTTGGCTGTAGGCCAGATGGCTTCCAGGCCTCAGTTGGGCAGTAGGGGTAAGTGAGTAATTCAAGGAATAAGCATGCACCTGTGGATAATTAACATGGttcttttcactgtgtgtgttgcaggaggagaggaaaaggagagagCATTTTGAAAGAGCTGAGCTGGGAGGAAGCAGAAACGTGCgcgtttgtgttttttgttattttctgaaTGAGACCTGCTGCGTATGCATTCCTTGATACACCTACCTAGGGTTCAACATATGCTTTAATACATGACATAGTAAGTAATAAGGCCAAAGCCCCAACTACTGAGACATTGGGGACACTTAATAACATTGCACATGATGTTTCCAAACTAACAGCACtcttacaattaatattttcagACTTCTGCCTGGAAAAAATAACtccactgatcctcttcctacAATATCTAAACAGGATGTTGAGGTATCTTGGTCCACTCGTCTATCCAGAACATTTTAAGTGACATCATATTCTTAAGTGCTTATGCACTTCAATTCAGACGACAGGTTATTAGTAGTGCTTCAATCCGGAGACTGAGATGGTCATTGTAAAACACTAATTTGGTGTCTTTCTAACCATTTTTGTATTAACTTGAAAGTATGTTTGGCTTATCTTCTTCTTGAAATATCTATGGCCATGTGTTAACCCCCAAGTAGAAGCAACAACATTTTACACTGAGCATCAGGTGCTTTTCCTTGTATGCAGTCCCCTTTTGTCACCAGATATGCTAATGGTGTGCATGACCAAAATTTTGATATGACAACCGCATTAATCAACTAAGCATCAACTGAGTCAATCCTATTAATCTGAACCAGAGTgaaattgatcttttttttttgtttgcaacCTGGTTTGGTTTCACCTTGTATAATTATatgaaacaaaaagcaaaaggggtgtgtgtttatatccaTTTCTAAAatactgttattttaaaaagttgttaGAATAGGAATTAGCTTTTGTTAGAACAAAGATAAATAGTTAATCATACTGTTTGAGGGGAAATTTCAATTATAATATGTATTGTTTACACAACCATTTATGCCAATATTTCGGGAGGgtactgtatgttttatattagaaaactatattaaaaagctttcacatttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375617 True 2973 lncRNA 0.41 2 8938718 8942335

Neighbor

gene id symbol gene type direction distance location
urb1 urb1 coding upstream 46760 8815766 ~ 8891958 (+)
cavin4a murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748 coding upstream 135808 8800697 ~ 8802910 (+)
med17 med17 coding upstream 152060 8757957 ~ 8786658 (+)
gtpbp4 gtpbp4,LOC107721733,LOC107749117,LOC107690210,LOC107659538 coding upstream 260624 8667284 ~ 8678094 (+)
slc39a6 slc39a6,LOC107749133 coding upstream 281119 8631553 ~ 8657599 (+)
LOC113543050 LOC108280424 coding downstream 66866 9009201 ~ 9027258 (+)
LOC113543049 LOC108280422 coding downstream 91234 9033569 ~ 9163194 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding downstream 226076 9168411 ~ 9219101 (+)
LOC113533645 arhgap12,LOC108280343 coding downstream 590342 9532677 ~ 9642644 (+)
LOC113533145 NA coding downstream 846662 9788997 ~ 9827888 (+)
G317148 NA non-coding upstream 34649 8903190 ~ 8904069 (+)
LOC117599967 NA non-coding upstream 38845 8898269 ~ 8899873 (+)
G317136 NA non-coding upstream 116825 8820224 ~ 8821893 (+)
G317125 NA non-coding upstream 132993 8805270 ~ 8805725 (+)
G317113 NA non-coding upstream 144774 8793714 ~ 8793944 (+)
G317166 NA non-coding downstream 16102 8958437 ~ 8958651 (+)
G317200 NA non-coding downstream 27826 8970161 ~ 8973355 (+)
G317257 NA non-coding downstream 144509 9086844 ~ 9095548 (+)
G317395 NA non-coding downstream 502374 9444709 ~ 9465969 (+)
G317400 NA non-coding downstream 558322 9500657 ~ 9500860 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 125308 8811595 ~ 8813410 (+)
G316745 NA other upstream 669520 8268709 ~ 8269198 (+)
G316744 NA other upstream 674657 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 1181757 7751694 ~ 7756961 (+)
G316413 NA other upstream 1242799 7695534 ~ 7695919 (+)
G317390 NA other downstream 469988 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1016658 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 1594096 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 1621486 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 1788011 10730346 ~ 10734088 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_10785561_10788308 NA coding CI01180000 null 10784787 ~ 10789157 (-)
mexican tetra (Astyanax mexicanus) G227794 NA non-coding NW_019170657.1 APWO02000255.1 37724 ~ 39743 (+)