G678444


Basic Information

Item Value
gene id G678444
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 387841 ~ 390386 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799075
GTGATTTTTAATTTTAAAATGGCAGTTTCAGTAGATAAATATACAGGCTTGAGCTTGTACAACAAACATATTTCTCAATACATCTATAAAACTGAAATTCAGTGACAGTAGTTTATTCCAAAATGCTCAAAATAGGTGATAATGGCAACAACACTCACAGTTATGATACACACTTACAATGTCAAGTATGTGTCTCTCTGAAACACACCTATGCAAGAATGTTGGGCCGGGCATGAAATGCAGACGTGTTTTTGCCATGCCAGTGGTGATATTAAGATATATATTGTTGGAAAATCTTCCAGAGATCATCTAACATCCAACTGCAAAGCTATTGATCATTTGGCAAACATCAAAGAAATGGTTACTTTCATATGAACCCTCTAAAATGAGAGGGAAATGAAAAAGTTCAATGAATAAAACACTTTAAAATGTCGTTTCTGCTGTGGTTCTCTGTTTGAGCGGTTAATGGATGTGAAGTCTGACAGCGAACGGCTCATGTAAAGGCCTGCGCTCTGAGTGAAGTCCAAAATGTTGACTTAAAACAAGCTGTTCCCATAAGCTCCAAAGTACGAGTTTGTGCCCAGTGATGAAGTACTGCACATTCCCATCTATTTTTAGGCCATTACACACTGCAGGTCTTACACGGTTAAACCTTTGCCTGTGAAGTCTGAGCGTCAAAAAACGTACTGTATGGTGTTAGGTTTACTGTAAGTCCAAAAATAATTTTTGGGGAATATTTGGCAATTTAAGTGTTTTATACTTGCAGTAGAATTCATGAGATCTAAAGTCAACCAACTGCAACATCTGTGAGTGAAAAAGGATTCAATGAGGAGAATTTGTAGGGTAACGTCATGTAGGAAAACATCTCAGGATTTTTCTTTTCGACTGAACTTAAACATCTTGGATGACATGGGGGTGAGTAAACTATCAGAAAATTTTAATTCTGAAGTGAACTAAGCCTTTAAGAATTGATTAGACTGTGAAAAGAATTTGACAAGTGGTTGGAAAATAAGACAGAAAAAGAAAGTTCTTATATATTTTGGTGAAAGAATCTTTTCATGCATCTTTCAGTGGGGTCAATATCCAGTGCAGTACAAACAATGCTCTAAGCTGTGAATTTCACATATAATGAACAAAATGTGTTTGAGCGTATATGCTTTTCTCTTTCTGTTTTTTAGCACAACCGGACTGAAACGAACAACTCGAGTCGTTGCATATTTGGGATAACAGTTCATCTCCTCTGTCATTGATGTTTGTTCGTGACATTTAGTAGCTCGAGAGTTGTCCGAATGAAGGACACTTTATATTCTCTGTAAATGAAAACTTGAGGGGATGAAGAGATCCAATCCATCTTCAAGGTCTGTGCATCAGAACACTGTGAAGGAATAACATCAACTCTTTGGCGTGTGTCAGTCATCAGTGCTTTAAAAACAACTCTTGAAGCTCTCTTCTATACAGTATGGAATACATTTTATAAAAAATAGATTTTTGCTTTTCAACAGCGCCCTGAGGGTTGAAATCGTCTGCTAGTATTGACACGATATCCACATTCCGTTTCAGGAAGTCTCTCTTTCCGTCTCTTCAGACCCACTGGCAAGAGGCCTGTCCCATTGGGATCAATGGAATTCCACTGCGAGTCTTTTCTGGCAGGCCACACGGTCACCTCGAAAGTCAGCTAGATCGCCATCAATGAAAAAAAGTGTCAAACCTCCGGAAAATCTGGAGAATATTCTTTTCTTCCACATATGGAAGGCTGGAGGGTTTTAGGAGAGAGCCGTGATGAAGGTAGCAGCTTATTGGATTTTCTGAACCCAATCCAAGCTCTCATTGGCTCTTCTGGACCCAATCCCAGCTTTCATCGCTGTCATTCCTGTTCTTTTCCGCCTCTATGATCTCTCTGTAATGCCTCCTGA
>TU799078
GTGATTTTTAATTTTAAAATGGCAGTTTCAGTAGATAAATATACAGGCTTGAGCTTGTACAACAAACATATTTCTCAATACATCTATAAAACTGAAATTCAGTGACAGTAGTTTATTCCAAAATGCTCAAAATAGGTGATAATGGCAACAACACTCACAGTTATGATACACACTTACAATGTCAAGTATGTGTCTCTCTGAAACACACCTATGCAAGAATGTTGGGCCGGGCATGAAATGCAGACGTGTTTTTGCCATGCCAGTGGTGATATTAAGATATATATTGTTGGAAAATCTTCCAGAGATCATCTAACATCCAACTGCAAAGCTATTGATCATTTGGCAAACATCAAAGAAATGGTTACTTTCATATGAACCCTCTAAAATGAGAGGGAAATGAAAAAGTTCAATGAATAAAACACTTTAAAATGTCGTTTCTGCTGTGGTTCTCTGTTTGAGCGGTTAATGGATGTGAAGTCTGACAGCGAACGGCTCATGTAAAGGCCTGCGCTCTGAGTGAAGTCCAAAATGTTGACTTAAAACAAGCTGTTCCCATAAGCTCCAAAGTACGAGTTTGTGCCCAGTGATGAAGTACTGCACATTCCCATCTATTTTTAGGCCATTACACACTGCAGGTCTTACACGGTTAAACCTTTGCCTGTGAAGTCTGAGCGTCAAAAAACGTACTGTATGGTGTTAGGTTTACTGTAAGTCCAAAAATAATTTTTGGGGAATATTTGGCAATTTAAGTGTTTTATACTTGCAGTAGAATTCATGAGATCTAAAGTCAACCAACTGCAACATCTGTGAGTGAAAAAGGATTCAATGAGGAGAATTTGTAGGGTAACGTCATGTAGGAAAACATCTCAGGATTTTTCTCCTGAACTTAAACATCTTGGATGACATGGGGGTGAGTAAACTATCAGAAAATTTTAATTCTGAAGTGAACTAAGCCTTTAAGAATTGATTAGACTGTGAAAAGAATTTGACAAGTGGTTGGAAAATAAGACAGAAAAAGAAAGTTCTTATATATTTTGGTGAAAGAATCTTTTCATGCATCTTTCAGTGGGGTCAATATCCAGTGCAGTACAAACAATGCTCTAAGCTGTGAATTTCACATATAATGAACAAAATGTGTTTGAGCGTATATGCTTTTCTCTTTCTGTTTTTTAGCACAACCGGACTGAAACGAACAACTCGAGTCGTTGCATATTTGGGATAACAGTTCATCTCCTCTGTCATTGATGTTTGTTCGTGACATTTAGTAGCTCGAGAGTTGTCCGAATGAAGGACACTTTATATTCTCTGTAAATGAAAACTTGAGGGGATGAAGAGATCCAATCCATCTTCAAGGTCTGTGCATCAGAACACTGTGAAGGAATAACATCAACTCTTTGGCGTGTGTCAGTCATCAGTGCTTTAAAAACAACTCTTGAAGCTCTCTTCTATACAGTATGGAATACATTTTATAAAAAATAGATTTTTGCTTTTCAACAGCGCCCTGAGGGTTGAAATCGTCTGCTAGTATTGACACGATATCCACATTCCGTTTCAGGAAGTCTCTCTTTCCGTCTCTTCAGACCCACTGGCAAGAGGCCTGTCCCATTGGGATCAATGGAATTCCACTGCGAGTCTTTTCTGGCAGGCCACACGGTCACCTCGAAAGTCAGCTAGATCGCCATCAATGAAAAAAAGTGTCAAACCTCCGGAAAATCTGGAGAATATTCTTTTCTTCCACATATGGAAGGCTGGAGGGTTTTAGGAGAGAGCCGTGATGAAGGTAGCAGCTTATTGGATTTTCTGAACCCAATCCAAGCTCTCATTGGCTCTTCTGGACCCAATCCCAGCTTTCATCGCTGTCATTCCTGTTCTTTTCCGCCTCTATGATCTCTCTGTAATGCCTCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799075 False 1913 lncRNA 0.39 2 387841 390386
TU799078 True 1908 lncRNA 0.39 2 387841 390386

Neighbor

gene id symbol gene type direction distance location
CI01180000_00368639_00375465 ZC3H6 coding upstream 11594 368639 ~ 376247 (+)
CI01180000_00361420_00364335 NA coding upstream 22715 361420 ~ 365126 (+)
CI01180000_00306160_00314770 NA coding upstream 72097 306160 ~ 315744 (+)
CI01180000_00263000_00297934 MERTK coding upstream 89375 263000 ~ 298466 (+)
CI01180000_00250154_00256723 LHCGR coding upstream 129173 250154 ~ 258668 (+)
CI01180000_00427700_00437883 NA coding downstream 37264 427650 ~ 438466 (+)
CI01180000_00661446_00671602 MSH6 coding downstream 270723 661109 ~ 672188 (+)
CI01180000_00737754_00743866 NA coding downstream 344924 735310 ~ 744211 (+)
CI01180000_00765917_00776252 NA coding downstream 375411 765797 ~ 776911 (+)
CI01180000_00812535_00858607 NA coding downstream 421471 811857 ~ 859005 (+)
G678508 NA non-coding upstream 60863 322749 ~ 326978 (+)
G678448 NA non-coding upstream 86513 299171 ~ 301328 (+)
G678501 NA non-coding upstream 136928 250685 ~ 250913 (+)
G678499 NA non-coding upstream 144130 243506 ~ 243711 (+)
G678493 NA non-coding upstream 152639 233616 ~ 235202 (+)
G678554 NA non-coding downstream 44347 434733 ~ 487143 (+)
G678442 NA non-coding downstream 55353 445739 ~ 492631 (+)
G678595 NA non-coding downstream 113485 503871 ~ 551174 (+)
G678608 NA non-coding downstream 142764 533150 ~ 533648 (+)
G678632 NA non-coding downstream 287488 677874 ~ 685043 (+)
G678440 NA other upstream 236189 147934 ~ 151652 (+)
G678751 NA other downstream 669457 1059843 ~ 1066091 (+)
G678637 NA other downstream 759165 1149551 ~ 1155672 (+)
G678946 NA other downstream 1127967 1518353 ~ 1612547 (+)
G679076 NA other downstream 1404784 1795170 ~ 1799433 (+)
G679324 NA other downstream 1998481 2388867 ~ 2397360 (+)

Expression


Co-expression Network