G681205


Basic Information

Item Value
gene id G681205
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5772774 ~ 5780374 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU802139
CTAAGTTGATTTAATGTGGATTACATTATCAGTTGTCACTTTAGATATAACTGAAAGATAGTATAGTACAAAGTGTCGTTGCACACAATTGAATAAATACAGTACTGTTTTTCTCAAAGGACAAATGACTTGAAAGAGTAGAGTAATGGCGCCATCTTGTGACCAAACCTTATGACGCTGCAAGGCTTTTCTATTGCACGAGGGTTAGCTTAAGCAAACAATAATGTTTTAATAATAATGAGGTTTAGAGCTTTTGCTGCACTGTTTCAGATTTCTAAAACATATTAATAGTTTTCATGAACACCAGACAATTTTTTTTTTCAGTGTATTCTATTTATTTGTTTATTTATTGTTAACCAATCTGGTTTATCTTTTGATAGCCAGTGTCAGGCCATCTCCAACAGTGAGCATACTGAGATCGATCCGCTCATCTTTGTGTAACTTCTTGTTCAGTTTGTCTATGGTCTGTGAGGAAAGGTCATCTTCAGCTGGATTGATGACCCGTCCACCCCAGAGGACCTGAAGAGCAGAAAGACACCAGCTTACTCACAACCAAAGAGGAAAGGTAGGAATATATTTGCTTTATTCATCTCAGTATTTTTTATTTAAATTAATCTGTAAAATGTAGCTGTGCACCCCCTGTTAAAAAAAACAGCATGCTATGTTTTGGAGCATGGCAGCTGGTTTGAACTGGTTTAAGATGGACCAGCTTATAACCAGTTCAGGACCAGCTTAAACCCGCTCACGACCAACTAAGGACCAGTTTAAACCAGCTCAAACCAGCTGCCATGCTTTAAAACATACCTAACCAGCATATGCTGTTTTTTTCAACAGGGCCCATACAGCATGTATTTACAAATGGGCTTGTTTCAAAACTAAACAGTGTGTACTGCATACTTACATTATCGATAGCTACAATGCCACCCTTTCGAACAAGCTGAAGTGACTTTTCATAGTATGTTTCATAATTCTTTTTGTCAGCGTCAATGAACACAAAGTCATACGTTCCAGCTTCACCAGCACTTAGGAGTTCATCTGTAAAGACACAAGGATGTTTTTTTTCTATATTTCCACTTGAAATAAAAATAAAATAATGTTGTATTACATGTATTTCATCTTTACCCAAGGTTTCAGCTGCAGGTTTAATGCGAATATCTATTTTATCCTCCACTCCGGCCTAAAACAAGGATAGTTTGCAGTTATTTGTTCTCATTTTAAATCCATAGTGAATAACAAAACATCCCTGTTGTTATCTTTGCTTTTCCCAGACATGTAAGTTTGCTTTATGATTGGGTTGGGTATTTTTAATGCTATTCTTATAAAACTATAGAATAAAAAGAGAAAATTGCATATAAAGCCTTTTGCTGATTGGCTTTGTGCCGATATCAGCACCTAAATGTACAATCACATCGGTCTCAAACAGCAATCAGTGTAAAGTCTGATGGACATTTCTGCATCTCTGCCTTAAATCGCTACTGGTCAGCTGGGCTTTATACTGATGACTGTGTTCTTGCAGTGGCAGGCAGTGATCAGTATTGAAATTGATACGTGTAGGTGTTCGTGGAGGAGCAACTTGACAGATACAGCTGTCTAAAGCAGTGATGTGTTCTTCTGAAACAAATGACTTCAGCTACATATAGCATGCATTAAAATGTACTATTCTGGGCTGTGTTTCCCAAAAGCATTGTGAACTAAGTTGATCGTAGAGAACATTGGTGGCAGTGGTCTCCACGGTCAGTTTGGGCTCATAATGCTTTTGGGAAACGCAGCCCGGTATAGTTTTGCACTGTATAGTAGTTGGACTGTGTTTTGCTTTGGTTTACCTCTATAAAAAATGGCTTGGCTATTTTCACATATTCCTCATCAATTTCACAGGCCACCACGCGTCCATTCTCAGGAATTGCCAGAGCCAGATTTAAGGCATTGTATCCTGTGTACATACCTAAGACAGATGCAAAATGTGTTTTACAGGAATCTTATGTGACGCTAATTGTTCCTGCTACTTGTGCCAAGTACCCACTGTTCTTCGACACAATCTACAGACAGGGCCCGGTCCCTCGGCTGCTCTCAGTGTCTGTTTAAGGACTGAAAGGATGCGTCTTGCCATCTGTGGAGAGCTCGTCTCTTCCTGTTCCCGGCCCTGATTGTATTTGCTCTTCCTTTGGCTGTCAGTGCATCACCTTGATATATGCTCACAAACCCTCTCAGAGGCTTTGAGTAAGGAATACAAGAAAAAAAGCCCTCCGCCGCTGGAAGAAGAAAGGAAAATACATACGAAACTGTTAATATGAAACAAAATAATTCAAGAGGTTGCTCCTTTGTTTTCTTCAAATGTAACAAATAAATAGAGTTGTATTTTTTAAAAATGCATTACTATTATACAGGAGCTGTTGCAACTCTTTTCCTGTTTGTAATTAAAGCCTAATATAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU802139 True 2432 lncRNA 0.39 2 5772774 5780374

Neighbor

gene id symbol gene type direction distance location
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding upstream 14638 5751556 ~ 5758136 (+)
CI01180000_05721160_05745421 MARCH8 coding upstream 27101 5721100 ~ 5745673 (+)
CI01180000_05605783_05625064 ZFAND4 coding upstream 147663 5605783 ~ 5626277 (+)
CI01180000_05587131_05604001 FAM21C coding upstream 167750 5587047 ~ 5605024 (+)
CI01180000_05566677_05569815 ALOX5, ALOX5A coding upstream 202920 5566677 ~ 5569854 (+)
CI01180000_05875768_05878028 NA coding downstream 94695 5875069 ~ 5878719 (+)
CI01180000_05919195_05919836 NA coding downstream 137731 5918105 ~ 5920447 (+)
CI01180000_05928275_05933064 NA coding downstream 147901 5927492 ~ 5945665 (+)
CI01180000_06060886_06073483 NA coding downstream 279007 6059381 ~ 6074222 (+)
CI01180000_06183820_06187700 NA coding downstream 401775 6182149 ~ 6187901 (+)
G681254 NA non-coding upstream 91369 5668992 ~ 5681405 (+)
G681242 NA non-coding upstream 106630 5662188 ~ 5666144 (+)
G681249 NA non-coding upstream 133390 5631099 ~ 5639384 (+)
G681426 NA non-coding upstream 189054 5583517 ~ 5583720 (+)
G681428 NA non-coding downstream 3274 5783648 ~ 5783914 (+)
G681440 NA non-coding downstream 22338 5802712 ~ 5802923 (+)
G681451 NA non-coding downstream 50273 5830647 ~ 5831091 (+)
G681459 NA non-coding downstream 66288 5846662 ~ 5846882 (+)
G681268 NA other upstream 399012 5370410 ~ 5373762 (+)
G681137 NA other upstream 987143 4783305 ~ 4785631 (+)
G680736 NA other upstream 1988333 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2200377 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3077338 2689271 ~ 2693221 (+)
G681592 NA other downstream 692661 6471995 ~ 6478999 (+)
G681686 NA other downstream 852534 6632908 ~ 6634989 (+)
G681667 NA other downstream 875472 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1622773 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1883049 7694529 ~ 7695667 (+)

Expression


Co-expression Network