Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU802139 |
| length | 2432 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G681205 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 5772774 ~ 5780374 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU802188 | lncRNA | upstream | 91369 | 5668992 ~ 5681405 (+) | True | G681254 |
| TU802176 | lncRNA | upstream | 106630 | 5662188 ~ 5666144 (+) | True | G681242 |
| TU802183 | lncRNA | upstream | 133390 | 5631099 ~ 5639384 (+) | True | G681249 |
| TU802187 | lncRNA | upstream | 146497 | 5619887 ~ 5626277 (+) | True | CI01180000_05605783_05625064 |
| TU802370 | lncRNA | upstream | 189054 | 5583517 ~ 5583720 (+) | True | G681426 |
| TU802374 | lncRNA | downstream | 3274 | 5783648 ~ 5783914 (+) | True | G681428 |
| TU802388 | lncRNA | downstream | 22338 | 5802712 ~ 5802923 (+) | True | G681440 |
| TU802399 | lncRNA | downstream | 50273 | 5830647 ~ 5831091 (+) | True | G681451 |
| TU802407 | lncRNA | downstream | 66288 | 5846662 ~ 5846882 (+) | True | G681459 |
| TU802171 | lncRNA | downstream | 147043 | 5927417 ~ 5951874 (+) | True | G681237 |
| CI01180000_05752328_05757955.mRNA | mRNA | upstream | 14638 | 5751556 ~ 5758136 (+) | True | CI01180000_05752328_05757955 |
| CI01180000_05721160_05745421.mRNA | mRNA | upstream | 27101 | 5721100 ~ 5745673 (+) | True | CI01180000_05721160_05745421 |
| CI01180000_05605783_05625064.mRNA | mRNA | upstream | 147663 | 5605783 ~ 5625111 (+) | False | CI01180000_05605783_05625064 |
| CI01180000_05587131_05604001.mRNA | mRNA | upstream | 167750 | 5587047 ~ 5605024 (+) | True | CI01180000_05587131_05604001 |
| CI01180000_05566677_05569815.mRNA | mRNA | upstream | 202920 | 5566677 ~ 5569854 (+) | True | CI01180000_05566677_05569815 |
| CI01180000_05875768_05878028.mRNA | mRNA | downstream | 94695 | 5875069 ~ 5878719 (+) | True | CI01180000_05875768_05878028 |
| CI01180000_05919195_05919836.mRNA | mRNA | downstream | 137731 | 5918105 ~ 5920447 (+) | True | CI01180000_05919195_05919836 |
| CI01180000_05928275_05933064.mRNA | mRNA | downstream | 147901 | 5928275 ~ 5933252 (+) | False | CI01180000_05928275_05933064 |
| CI01180000_06060886_06073483.mRNA | mRNA | downstream | 279007 | 6059381 ~ 6074222 (+) | True | CI01180000_06060886_06073483 |
| CI01180000_06183820_06187700.mRNA | mRNA | downstream | 401775 | 6182149 ~ 6187901 (+) | True | CI01180000_06183820_06187700 |
| TU802202 | other | upstream | 399012 | 5370410 ~ 5373762 (+) | True | G681268 |
| TU802064 | other | upstream | 987143 | 4783305 ~ 4785631 (+) | True | G681137 |
| TU801653 | other | upstream | 1988333 | 3765691 ~ 3784441 (+) | True | G680736 |
| TU801631 | other | upstream | 2200377 | 3553277 ~ 3563250 (+) | False | G680723 |
| TU802553 | other | downstream | 692661 | 6473035 ~ 6478999 (+) | True | G681592 |
| TU802663 | other | downstream | 852534 | 6632908 ~ 6634989 (+) | True | G681686 |
| TU802641 | other | downstream | 875472 | 6655846 ~ 6659546 (+) | True | G681667 |
| TU802812 | other | downstream | 1622773 | 7403147 ~ 7469605 (+) | True | G681817 |
| TU802830 | other | downstream | 1883049 | 7663423 ~ 7694381 (+) | True | G681822 |
