RNA id: TU802374


Basic Information

Item Value
RNA id TU802374
length 267
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G681428
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5783648 ~ 5783914 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCCATATGTGAACATGGTCCAGAAGCGCCGTCGTGTCCTGTGGGCCAAAACTCATTTAAAATGGACTGTTTCAAAGTGGAAAAGTGTTCTATGGTCAGATGAGTCCAAATTTGACATTCTTGTTGGAAATCACGGACGCTGTGTCCTCCGGGCTAAAGAGGAGGGAGACCTTCCAGCGTGTTATCAGTGTTCAGTTCAAAAGCCAGCATCTCTGATGGTATGGGGGTGCATAAGTGCATACAGTATGGGAAGCTTGCATGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802139 lncRNA upstream 3274 5772774 ~ 5780374 (+) True G681205
TU802188 lncRNA upstream 102243 5668992 ~ 5681405 (+) True G681254
TU802176 lncRNA upstream 117504 5662188 ~ 5666144 (+) True G681242
TU802183 lncRNA upstream 144264 5631099 ~ 5639384 (+) True G681249
TU802187 lncRNA upstream 157371 5619887 ~ 5626277 (+) True CI01180000_05605783_05625064
TU802388 lncRNA downstream 18798 5802712 ~ 5802923 (+) True G681440
TU802399 lncRNA downstream 46733 5830647 ~ 5831091 (+) True G681451
TU802407 lncRNA downstream 62748 5846662 ~ 5846882 (+) True G681459
TU802171 lncRNA downstream 143503 5927417 ~ 5951874 (+) True G681237
TU802455 lncRNA downstream 395758 6179672 ~ 6179921 (+) True G681506
CI01180000_05752328_05757955.mRNA mRNA upstream 25512 5751556 ~ 5758136 (+) True CI01180000_05752328_05757955
CI01180000_05721160_05745421.mRNA mRNA upstream 37975 5721100 ~ 5745673 (+) True CI01180000_05721160_05745421
CI01180000_05605783_05625064.mRNA mRNA upstream 158537 5605783 ~ 5625111 (+) False CI01180000_05605783_05625064
CI01180000_05587131_05604001.mRNA mRNA upstream 178624 5587047 ~ 5605024 (+) True CI01180000_05587131_05604001
CI01180000_05566677_05569815.mRNA mRNA upstream 213794 5566677 ~ 5569854 (+) True CI01180000_05566677_05569815
CI01180000_05875768_05878028.mRNA mRNA downstream 91155 5875069 ~ 5878719 (+) True CI01180000_05875768_05878028
CI01180000_05919195_05919836.mRNA mRNA downstream 134191 5918105 ~ 5920447 (+) True CI01180000_05919195_05919836
CI01180000_05928275_05933064.mRNA mRNA downstream 144361 5928275 ~ 5933252 (+) False CI01180000_05928275_05933064
CI01180000_06060886_06073483.mRNA mRNA downstream 275467 6059381 ~ 6074222 (+) True CI01180000_06060886_06073483
CI01180000_06183820_06187700.mRNA mRNA downstream 398235 6182149 ~ 6187901 (+) True CI01180000_06183820_06187700
TU802202 other upstream 409886 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 998017 4783305 ~ 4785631 (+) True G681137
TU801653 other upstream 1999207 3765691 ~ 3784441 (+) True G680736
TU801631 other upstream 2211251 3553277 ~ 3563250 (+) False G680723
TU802553 other downstream 689121 6473035 ~ 6478999 (+) True G681592
TU802663 other downstream 848994 6632908 ~ 6634989 (+) True G681686
TU802641 other downstream 871932 6655846 ~ 6659546 (+) True G681667
TU802812 other downstream 1619233 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 1879509 7663423 ~ 7694381 (+) True G681822

Expression Profile