RNA id: CI01180000_05566677_05569815.mRNA


Basic Information

Item Value
RNA id CI01180000_05566677_05569815.mRNA
length 628
RNA type mRNA
GC content 0.43
exon number 5
gene id CI01180000_05566677_05569815
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5566677 ~ 5569854 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGGAAGGAGTGGCATCCTGGCTTCCCTATGAGTATAGATGCCAAAGCCCATAGTGAGCTTCCACGAGACATTCAGTTTGACAGCGAGAAAGGAGTGGACTTTGTGCTCAACTACAGCAAAGGGATTGAGAATCTTTACGTAAACCAGTTCATGCACATGTTCCAGTCCTCATGGGGAGATTTTGCAGACTTTGAGCGTATATTTGTGAGAATTAAGAACACAATATCAGAGTATGTGATGGAGCATTGGAAGGAAGACTTCATGTTTGGATACCAGTTCTTGAATGGCTGTAATCCAGTGGTCATCAGGAAATGCACAGAAATTCCTGACAAGTTTCCAATCACACAAAAGCTTGTGGAGGACAGTCTGGAGAGAGGTCTCACGCTGGAAGAAGAGCTCAAGGAAGGAAACATCTTTATTGCTGACTATGAGTTAATGGACGGTGTTACTGCCAATGCTACGGACCCATGCACCCTTCAATACTTGGCTGCACCCATCTGTTTGCTGTATAAGAACAGTCAGAACAAAATCATGCCAGTCGCCATCCAGGATATGCTTTTTGCAAAAATACAGAGCAATAAATGTTGATAGAAGATGGAGTAGAAAATGGCTTTGAAAGTAACCCG

Function

GO:

id name namespace
GO:0004051 arachidonate 5-lipoxygenase activity molecular_function

KEGG:

id description
K00461 ALOX5; arachidonate 5-lipoxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802203 lncRNA upstream 34585 5526957 ~ 5532092 (+) True G681269
TU802346 lncRNA upstream 45318 5520237 ~ 5521359 (+) True G681405
TU802161 lncRNA upstream 64547 5499664 ~ 5502130 (+) True G681227
TU802341 lncRNA upstream 67260 5499213 ~ 5499417 (+) True G681400
TU802156 lncRNA upstream 127362 5433842 ~ 5439315 (+) True G681222
TU802369 lncRNA downstream 13246 5583100 ~ 5583367 (+) True G681425
TU802370 lncRNA downstream 13663 5583517 ~ 5583720 (+) True G681426
TU802187 lncRNA downstream 50033 5619887 ~ 5626277 (+) True CI01180000_05605783_05625064
TU802183 lncRNA downstream 61245 5631099 ~ 5639384 (+) True G681249
TU802176 lncRNA downstream 92334 5662188 ~ 5666144 (+) True G681242
CI01180000_05552106_05558265.mRNA mRNA upstream 7602 5551875 ~ 5559075 (+) True CI01180000_05552106_05558265
CI01180000_05460865_05464029.mRNA mRNA upstream 102144 5460865 ~ 5464533 (+) True CI01180000_05460865_05464029
CI01180000_05361478_05362402.mRNA mRNA upstream 204171 5361299 ~ 5362506 (+) True CI01180000_05361478_05362402
CI01180000_05307085_05313251.mRNA mRNA upstream 253288 5306869 ~ 5313389 (+) True CI01180000_05307085_05313251
CI01180000_05276728_05284341.mRNA mRNA upstream 282110 5276418 ~ 5284567 (+) True CI01180000_05276728_05284341
CI01180000_05587131_05604001.mRNA mRNA downstream 17193 5587047 ~ 5605024 (+) True CI01180000_05587131_05604001
CI01180000_05605783_05625064.mRNA mRNA downstream 35929 5605783 ~ 5625111 (+) False CI01180000_05605783_05625064
CI01180000_05721160_05745421.mRNA mRNA downstream 151246 5721100 ~ 5745673 (+) True CI01180000_05721160_05745421
CI01180000_05752328_05757955.mRNA mRNA downstream 181702 5751556 ~ 5758136 (+) True CI01180000_05752328_05757955
CI01180000_05875768_05878028.mRNA mRNA downstream 305215 5875069 ~ 5878719 (+) True CI01180000_05875768_05878028
TU802202 other upstream 192915 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 781046 4783305 ~ 4785631 (+) True G681137
TU801653 other upstream 1782236 3765691 ~ 3784441 (+) True G680736
TU801631 other upstream 1994280 3553277 ~ 3563250 (+) False G680723
TU802553 other downstream 903181 6473035 ~ 6478999 (+) True G681592
TU802663 other downstream 1063054 6632908 ~ 6634989 (+) True G681686
TU802641 other downstream 1085992 6655846 ~ 6659546 (+) True G681667
TU802812 other downstream 1833293 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 2093569 7663423 ~ 7694381 (+) True G681822

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012675 False 2039 mRNA 0.47 14 NC_007124.7 18128275 ~ 18174864 (-)