Gene
RNA
| Item | Value |
|---|---|
| gene id | G681674 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 6645108 ~ 6645323 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU802648 | True | 216 | lncRNA | 0.40 | 1 | 6645108 | 6645323 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01180000_06638215_06643427 | TTL | coding | upstream | 1288 | 6637809 ~ 6643820 (+) |
| CI01180000_06608734_06626459 | IKAROS, IKZF1 | coding | upstream | 18296 | 6608734 ~ 6626812 (+) |
| CI01180000_06581704_06589445 | NA | coding | upstream | 55627 | 6580990 ~ 6589481 (+) |
| CI01180000_06532667_06556697 | VWC2 | coding | upstream | 87604 | 6532276 ~ 6557504 (+) |
| CI01180000_06503211_06517041 | NA | coding | upstream | 128006 | 6503211 ~ 6517102 (+) |
| CI01180000_06704767_06711402 | BAG5 | coding | downstream | 59444 | 6704767 ~ 6712156 (+) |
| CI01180000_06714748_06715005 | NA | coding | downstream | 69282 | 6714605 ~ 6715107 (+) |
| CI01180000_06755090_06760583 | NA | coding | downstream | 109767 | 6755090 ~ 6760583 (+) |
| CI01180000_06762114_06762590 | NA | coding | downstream | 116791 | 6762114 ~ 6762772 (+) |
| CI01180000_06813558_06824034 | NA | coding | downstream | 167339 | 6812662 ~ 6824522 (+) |
| G681685 | NA | non-coding | upstream | 13179 | 6631653 ~ 6631929 (+) |
| G681683 | NA | non-coding | upstream | 14562 | 6630330 ~ 6630546 (+) |
| G681682 | NA | non-coding | upstream | 15045 | 6629825 ~ 6630063 (+) |
| G681592 | NA | non-coding | upstream | 166109 | 6471995 ~ 6478999 (+) |
| G681591 | NA | non-coding | upstream | 177884 | 6442303 ~ 6467224 (+) |
| G681652 | NA | non-coding | downstream | 119 | 6645442 ~ 6646838 (+) |
| G681706 | NA | non-coding | downstream | 90530 | 6735853 ~ 6736093 (+) |
| G681708 | NA | non-coding | downstream | 92276 | 6737599 ~ 6737901 (+) |
| G681739 | NA | non-coding | downstream | 191996 | 6837319 ~ 6837698 (+) |
| G681749 | NA | non-coding | downstream | 233238 | 6878561 ~ 6878839 (+) |
| G681686 | NA | other | upstream | 10119 | 6632908 ~ 6634989 (+) |
| G681268 | NA | other | upstream | 1271346 | 5370410 ~ 5373762 (+) |
| G681137 | NA | other | upstream | 1859477 | 4783305 ~ 4785631 (+) |
| G680736 | NA | other | upstream | 2860667 | 3765691 ~ 3784441 (+) |
| G681667 | NA | other | downstream | 10523 | 6655846 ~ 6659546 (+) |
| CI01180000_07403482_07412752 | HELLS | other | downstream | 757824 | 7403482 ~ 7413190 (+) |
| CI01180000_07694615_07695428 | MRPL14 | other | downstream | 1018100 | 7694529 ~ 7695667 (+) |
| G682232 | NA | other | downstream | 1722862 | 8368185 ~ 8368935 (+) |
| CI01180000_09036547_09038313 | MGST3B | other | downstream | 2391094 | 9035736 ~ 9038892 (+) |
