G681667


Basic Information

Item Value
gene id G681667
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6655846 ~ 6659546 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU802641
GGTAAAAGATGAGAAAAGAGGTTAAAAAAAAAAAATTGGATAACACCGCAAGTGGAACCAAAAGACAGAAAATGGAGGAAACAGGCATGCAGCAGACAGCAAATTTGCATGGAAATGTTTATTCAGTTAAACAAATGTACAACACAGCACAAAGTAATAAAAGTCCTCAAATAAAAAACAGATCCAAGCAGACACAAAAAGGCATCAAGAAAATCACCGAGCAAAACGGCATAAAAGATGAACAAAGTAATCATAACACACACCAGAAAATATAGTTAAAATGCAAAGAATAAATAAAAACAAATGGCATTTTACAGGGTAAGGAGAGAAAGTTAGTCACATCTGGCAAATCAGATGCTACAGGCAACCCAGTGAGCCGTCCTGAACACACTGCATCATAATGTCATTTGTCCGTCACGTTAGATGTCAATGTGTCATTCAGGGTTAAGCAGGTTTATACATGTGCAAAAAAAAAAATACAGCCCAGTTAATAAAGCAAGCAAATCCCTTCATCCACTTAAAACTGGGTAGTGAAAGAGAAAGACTTTGCATATACCAGCAGAGGACTTTCCTTCATTATAACGTCATCACAGTGTGCAAAATCCCATCTCCATGTAGTAAACCACCTGCCTTCCTCGCATTAAAGAGATCATTCTATAAAGCCGTCCCATAAACCCTTTTAAAAGGAAAAGCTTTTTTTTTTTTTTGGTGTCATCCAGTGTTTAGAGTAATTCAGATTGGGACATTCACTTTATGCTCTCCATATTTACAGTCTATGACTCCAATGACATTTAAATTATTTTTTAGAATGTCTAATGACATCATTCCAGACAGAAATACTGATTGTAATTCTGTCCCTGTGAGATCCTAAACTGCTCAATCCTGCACATCAAGATCTACTTCACTGCAGAGTTCTCAATTTTAATAATTTTAAAAATGTCTTCCCAAAAGTATGATTGAGCATTCCCCTTTCCCAGTTTTCAAACCATATAGTCATTCAAGTTGCTATTCCAGTGTATAATGTTTAACGGTGATGGTGTCATATTCGCCTACCCATTGTTCAGTCCGAAATGGGAAGGTTTGAGATGTTGGAAAGGGGAGGTTTGGTCTGAAAATAGGGATGGAAGTGGTGATAGTTACCCAGGATTTTTGGGTTCGTTTTCTCGTAAGCCTCCTCCTTTGAGCTTGCGGACCAGTTTCTCACTGCTGCGTCGGATAGAGGCCCGCAGTTTACTAAAGGAACCGCTGCGCTTCAATGAGCCCGAGCCGTCCTGCCAACAGAAAGGCTGCAGCATTAAAACCACACATACTTATTCACATACTGCACATTAGTGAAAGAGGGCACTGTCCTTTGTCACAAGCTCATCCTCAAACACACTCAAGCACAATGATCACTTACCTGGATCTGGAAATGTTATGGTTATGTTAGTTTAAAAGGGATAATTCACCCGAAAAAGAAAATTCTGTCATAAATTACTCACCCTCATGTCATTCTAAGTCATATAGTTACATGACGAACATATAAAAGGTTCGGTTGAGCTTCTGTTAATGTTCGCTGATTAATGGTTATATGTAAATAAAAGCCAAAATTCAATATGTTCATCATATAAAGTGATCAAGTCTCTTCAGAATATTTGGACTAAACCACTCAATTCATATGGATTAGTTTTACGATCTCTTTATGAACTTTTTGAAAAGACAAAGTGTCAGTTTTGTAGCTGTCTATCTCAGATTTCATTTAAAATATCTTCATTTGTGTTTTGAAGATGAATGAAAGTCTTACGGGTTTGAAAGGACATGATGGCAAATTTGTTCATTTTTGGGTGAGCTAGCCCTTTAAACTAAAACATTATTTTCTAAATCTCTTAAATATGGCTCAAACATGACCACAGTTCAATTTGTTATTTTCATCTTTCAAGAAAGAAAAAAATATACTTTATAAATAATCTTTTCTCATGCTCTACTCCAAAAAAATATTTCTTAATGACTCTCCGTTACATTTTCCAGTTATTCATGACTACGAGATAATAATTAAAAATTGTTAAAGAATTATTTTAAAAGAATTAACTGTATACAGACTTATACTGTACTATACAATTCTATACAATTTCTAGTTAATTTTACAGCTGAGCATTTCTAGAAAGATCACTATAGAAATCTAAATGTAAAATCCAAATTTTAAAATTCCTTAAAGTTCCCAGGTTTGAAATCTTCCCATTAAAGTATGAACCCTGTAGGTCCCGATACATTTCGTCCTCCGATCTTTACCACAGCCTGCTCTGCTGCAGTCTCTTCTGCTGCGACCCCTCACCTTTGACCCCCTGAACCTGGCTATTCATCCAGGGGCTTGGAAAAGCGATGAGGATTTTGGAGGGGTTGATGGAGGTGGAGGGGGGAGGAAGGAGAGGTTTGAAGAAGATGCAACACTGACCCAGAAAAATCATGACAACCACCTCCATTAAAAAGACAAGCAGTTACAGCTCACAACCACACCAACATCAGGCTTAAACATTTCACTGGGAAAACACACATATGCTTTCAAAAGAGAAGGAGAACACAGACAGAGGCTGTGGTGAGCAAAGTCAGTTTTATTTGAAGTTATGAAAGACACAAGATGCAGCAACACACCAGAGAACGTGTTAGTAGAAGAAAGAAAACAAGAGCATCAGATTCTACAGACATGCTTCTATTTGTCCCATCTCATCCCTCTCTTCTCATCTACCCATCTCCCTTCTCTAGTGTTCTACTATGTACAATGTCACACAATAATGAACAATATGAAATGGTTTGAAAAAGTGTGTGGAAAGCAAGTTTTAGTGGACTATACAGATGCTGAAGAACACAACCATGCCACATTAATCCACTGTACAGGAAGTGTGAGAGAGAGAGATAGCATTACAGGGCTCACTTTCAGACACAGCAGATCAAAGTTCAAATGGCTCTCAGCACTACAAAACATTGAGGGGAACCAATGAGAAATGAGAGAATTAAGTGTAACAGGACCTGCAGCTTAAATCAATGTTAGCGTCGATACAAGAGAAGCTGCATTTGCAGCATTTCTGGCATAATGGTGATTAGCACAATGTATAATTCTGACTCATACCTCAGGTTATTTGTTTTGTTTTAATACAATCAAACCAAAAATTATTCAGACATTTTTGATATTTCTGATATATTTTTACTAGTGGGTGCAGGACACTATAGTTCATTTATGTAAGTGGATAGCTAAATAAACTGTGACATATTATACCCAAAAATTATTCATACAGTGGACTACCAGTAAAATTGCTAAAAATTTGGAACCAAAAATTATTCAGACACTTTGACCTGACCCTGTTTTGCTTAAGTGTTATCTGACATAATTAAGATTAAGTTTTTCTGACACAGTTTAACTCTGAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU802641 True 3401 TUCP 0.37 2 6655846 6659546

Neighbor

gene id symbol gene type direction distance location
CI01180000_06638215_06643427 TTL coding upstream 12026 6637809 ~ 6643820 (+)
CI01180000_06608734_06626459 IKAROS, IKZF1 coding upstream 29034 6608734 ~ 6626812 (+)
CI01180000_06581704_06589445 NA coding upstream 66365 6580990 ~ 6589481 (+)
CI01180000_06532667_06556697 VWC2 coding upstream 98342 6532276 ~ 6557504 (+)
CI01180000_06503211_06517041 NA coding upstream 138744 6503211 ~ 6517102 (+)
CI01180000_06704767_06711402 BAG5 coding downstream 45221 6704767 ~ 6712156 (+)
CI01180000_06714748_06715005 NA coding downstream 55059 6714605 ~ 6715107 (+)
CI01180000_06755090_06760583 NA coding downstream 95544 6755090 ~ 6760583 (+)
CI01180000_06762114_06762590 NA coding downstream 102568 6762114 ~ 6762772 (+)
CI01180000_06813558_06824034 NA coding downstream 153116 6812662 ~ 6824522 (+)
G681652 NA non-coding upstream 9008 6645442 ~ 6646838 (+)
G681674 NA non-coding upstream 10523 6645108 ~ 6645323 (+)
G681685 NA non-coding upstream 23917 6631653 ~ 6631929 (+)
G681683 NA non-coding upstream 25300 6630330 ~ 6630546 (+)
G681682 NA non-coding upstream 25783 6629825 ~ 6630063 (+)
G681706 NA non-coding downstream 76307 6735853 ~ 6736093 (+)
G681708 NA non-coding downstream 78053 6737599 ~ 6737901 (+)
G681739 NA non-coding downstream 177773 6837319 ~ 6837698 (+)
G681749 NA non-coding downstream 219015 6878561 ~ 6878839 (+)
G681755 NA non-coding downstream 231338 6890884 ~ 6891084 (+)
G681686 NA other upstream 20857 6632908 ~ 6634989 (+)
G681592 NA other upstream 176847 6471995 ~ 6478999 (+)
G681268 NA other upstream 1282084 5370410 ~ 5373762 (+)
G681137 NA other upstream 1870215 4783305 ~ 4785631 (+)
G680736 NA other upstream 2871405 3765691 ~ 3784441 (+)
CI01180000_07403482_07412752 HELLS other downstream 743601 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1003877 7694529 ~ 7695667 (+)
G682232 NA other downstream 1708639 8368185 ~ 8368935 (+)
CI01180000_09036547_09038313 MGST3B other downstream 2376871 9035736 ~ 9038892 (+)
G685188 NA other downstream 4160440 10819986 ~ 10866176 (+)

Expression


Co-expression Network