XLOC_015399 (sept2)


Basic Information

Item Value
gene id XLOC_015399
gene name sept2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22592139 ~ 22615366 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030827
GTACTTCACATTTGTGCTGTCGGCGTCAGTGAGAGTTCCGGAATCTCAGGAATTTGGGCTGTACGTCTCTTCAACCTCCTGCAGCAGCGACCCCAGGACTTTCCGCGACTTAAAGGTTTGCTTCAAACTCAGAATGTCTCAAGCTGATAAACTGAAGCAACAGGGACAGTTCACAAACCCTGAGACTCCTGGGTATGTTGGGTTCGCAAATCTGCCAAACCAGGTGCATCGGAAATCAGTGAAAAAGGGCTTTGAGTTCACTCTCATGGTGGTCGgtgAGTCTGGTTTGGGGAAGTCAACGCTGATCAACAGTTTGTTCCTCACCGATCTTTACCCAGAGAGGGTCATTCCTGGTGCTGCAGAGAAGATTGAGCGTACTGTGCAGATTGAGGCCTCAACAGTGGAGATTGAGGAGCGTGGAGTGAAGCTGCGTCTCACTGTGGTCGACACACCTGGATACGGGGATGCCATCAACAGTCAGGACTGTTTTAACACCATTATCTCATACATCGATGACCAGTTTGAGCGCTATCTACATGACGAGAGTGGACTGAACCGCAGACACATTGTGGACAACCGTGTTCACTGCTGCTTCTACTTCATTTCCCCTCTGGGTCACGGcctgaaGCCTCTAGATGTCCAGTTCATGAAGGCCATTCACAACAAAGTGAATGTTGTTCCGGTTATTGCTAAAGCTGATACACTGACACTGAGGGAAAGAGAGAGGCTCAAGCGCaggATTCTGGATGAAATCGATGAGCACGGCATTAAGATCTATCACCTCCCTGACGCTGAGTCTGATGAGGACGAAGATTTCAAAGAGCAGACTAGGATTCTCAAGGCCAGCATACCGTTTGCTGTGGTGGGCTCCAACCAGCAGATTGAGGCCAAAGGGAAGAAAGTGAGAGGGCGTCTGTACCCATGGGGTGTAGTGGAGGTGGAAAACCCAGAACACAACGACTTCCTCAAACTTCGCACCATGCTAATCACTCACATGCAGGACCTGCAGGAGGTGACCCAGGACCTCCACTATGAGAACTTCCGCTCAGAGCGCCTCAAACGGGGCGGCAGGTTGTCTTCCCATGGTTACATTCTGCCTCTGTCGCCTGCGAAGGGTCCGGAACCTGAGGAAATGGACAAGGACATGATCCTCCTGGAGAAGGAGGCTGAGCTGAGGAGGATGCAGGAGATGATTGCTAAGATGCAGGCACAGATGCAGAAGCAGGGAGATGAAGATGCGTGAAAACCACGATGCTGACTTGTTTGAGCTCGACCCATCTAGACATGGTTGGAGAAGAGGAAGTGTTGCTAAATGTGGAGGAAGAGAGACTTGGTCCCTACATCATCCTGTTTGCCATTTTCTtagtttctttctcttttttgaaTTCATTATGTTTGTTTCTTTGATTGTTTAAAGCAGtattcagatttgtttttcaaatactgTTGCTAATATTCATCCAGTTATCTTTCCATTAACCTAAAATGAAGAACCACCATAAGTAattaagaaaaactttttttttctgttacgaAAGCCAAGTGCTGCTGGAAAGGACCATGAAGCACCTTTTAATAGTAGCTTAGCTCCAAAACACCTTAAAGGCATTTCTGTCCCATCTATAATTAAACAGACACTGTGAAAATACAAGCAGCTGTGGAATCGTGAGTCACGGTGATGGTTTTTGCACCTTGTTTTTGGAGAAATCGTTTTATACTGTTTGTAAGTGTTGCCAGAGAGATTGCTGATTTCTGAAGTACTTCTCTCTTCCCTGCATGAAGTCTTGAATTATAAGTGCTGTTCCCCAAACGGATGCAAAGCATAAAACTGTGACCCATGGTTCATTCCCTGTGCCGTCTGATGAAGGAGACGAGGCTTTTCTCTGACCTTAATAGTCATATTGCTGTTTTAATTGTAGCTGAGTGGATTCTGTCATGTATTTGCTGTCAGACATTGTTCTGGTTTGAGTGCAATGTGAAATTTCGATACATTTGTTGTGCTCTTTGACTTTGAAGCATGCTGAGTTTTTAACCTTCTGTTTGGGATATGTGGatgaaaactattttagcttATTCCTGTGGTTCAAGCAAACCTCCATATCATATTTctgattaaaaatgttaaaatgatatCTGAAATTTATATCTGTTACATAAAATCCGACTTGAAGAGAGTTAAATGTTACTATTTGGTCATGAAATCTGTTGTCAACATTCCAGTCTTATTATTTTACTTGAGGACTTTCTATTAAACCATTATTATCTATCATCGTATAATAAACTTTTGTATTGAAATTGA
>TCONS_00030826
GTACTTCACATTTGTGCTGTCGGCGTCAGTGAGAGTTCCGGAATCTCAGGAATTTGGGCTGTACGTCTCTTCAACCTCCTGCAGCAGCGACCCCAGGACTTTCCGCGACTTAAAGGTTTGCTTCAAACTCAGAATGTCTCAAGCTGATAAACTGAAGCAACAGGGACAGTTCACAAACCCTGAGACTCCTGGGTATGTTGGGTTCGCAAATCTGCCAAACCAGGTGCATCGGAAATCAGTGAAAAAGGGCTTTGAGTTCACTCTCATGGTGGTCGgtgAGTCTGGTTTGGGGAAGTCAACGCTGATCAACAGTTTGTTCCTCACCGATCTTTACCCAGAGAGGGTCATTCCTGGTGCTGCAGAGAAGATTGAGCGTACTGTGCAGATTGAGGCCTCAACAGTGGAGATTGAGGAGCGTGGAGTGAAGCTGCGTCTCACTGTGGTCGACACACCTGGATACGGGGATGCCATCAACAGTCAGGACTGTTTTAACACCATTATCTCATACATCGATGACCAGTTTGAGCGCTATCTACATGACGAGAGTGGACTGAACCGCAGACACATTGTGGACAACCGTGTTCACTGCTGCTTCTACTTCATTTCCCCTCTGGGTCACGGcctgaaGCCTCTAGATGTCCAGTTCATGAAGGCCATTCACAACAAAGTGAATGTTGTTCCGGTTATTGCTAAAGCTGATACACTGACACTGAGGGAAAGAGAGAGGCTCAAGCGCaggATTCTGGATGAAATCGATGAGCACGGCATTAAGATCTATCACCTCCCTGACGCTGAGTCTGATGAGGACGAAGATTTCAAAGAGCAGACTAGGATTCTCAAGGCCAGCATACCGTTTGCTGTGGTGGGCTCCAACCAGCAGATTGAGGCCAAAGGGAAGAAAGTGAGAGGGCGTCTGTACCCATGGGGTGTAGTGGAGGTGGAAAACCCAGAACACAACGACTTCCTCAAACTTCGCACCATGCTAATCACTCACATGCAGGACCTGCAGGAGGTGACCCAGGACCTCCACTATGAGAACTTCCGCTCAGAGCGCCTCAAACGGGGCGGCAGGAAGGGTCCGGAACCTGAGGAAATGGACAAGGACATGATCCTCCTGGAGAAGGAGGCTGAGCTGAGGAGGATGCAGGAGATGATTGCTAAGATGCAGGCACAGATGCAGAAGCAGGGAGATGAAGATGCGTGAAAACCACGATGCTGACTTGTTTGAGCTCGACCCATCTAGACATGGTTGGAGAAGAGGAAGTGTTGCTAAATGTGGAGGAAGAGAGACTTGGTCCCTACATCATCCTGTTTGCCATTTTCTtagtttctttctcttttttgaaTTCATTATGTTTGTTTCTTTGATTGTTTAAAGCAGtattcagatttgtttttcaaatactgTTGCTAATATTCATCCAGTTATCTTTCCATTAACCTAAAATGAAGAACCACCATAAGTAattaagaaaaactttttttttctgttacgaAAGCCAAGTGCTGCTGGAAAGGACCATGAAGCACCTTTTAATAGTAGCTTAGCTCCAAAACACCTTAAAGGCATTTCTGTCCCATCTATAATTAAACAGACACTGTGAAAATACAAGCAGCTGTGGAATCGTGAGTCACGGTGATGGTTTTTGCACCTTGTTTTTGGAGAAATCGTTTTATACTGTTTGTAAGTGTTGCCAGAGAGATTGCTGATTTCTGAAGTACTTCTCTCTTCCCTGCATGAAGTCTTGAATTATAAGTGCTGTTCCCCAAACGGATGCAAAGCATAAAACTGTGACCCATGGTTCATTCCCTGTGCCGTCTGATGAAGGAGACGAGGCTTTTCTCTGACCTTAATAGTCATATTGCTGTTTTAATTGTAGCTGAGTGGATTCTGTCATGTATTTGCTGTCAGACATTGTTCTGGTTTGAGTGCAATGTGAAATTTCGATACATTTGTTGTGCTCTTTGACTTTGAAGCATGCTGAGTTTTTAACCTTCTGTTTGGGATATGTGGatgaaaactattttagcttATTCCTGTGGTTCAAGCAAACCTCCATATCATATTTctgattaaaaatgttaaaatgatatCTGAAATTTATATCTGTTACATAAAATCCGACTTGAAGAGAGTTAAATGTTACTATTTGGTCATGAAATCTGTTGTCAACATTCCAGTCTTATTATTTTACTTGAGGACTTTCTATTAAACCATTATTATCTATCATCGTATAATAAACTTTTGTATTGAAATTGA
>TCONS_00030828
TTTTAACACCATTATCTCATACATCGATGACCAGTTTGAGCGCTATCTACATGACGAGAGTGGACTGAACCGCAGACACATTGTGGACAACCGTGTTCACTGCTGCTTCTACTTCATTTCCCCTCTGGGTCACGGcctgaaGCCTCTAGATGTCCAGTTCATGAAGGCCATTCACAACAAAGTGAATGTTGTTCCGGTTATTGCTAAAGCTGATACACTGACACTGAGGGAAAGAGAGAGGCTCAAGCGCaggATTCTGGATGAAATCGATGAGCACGGCATTAAGATCTATCACCTCCCTGACGCTGAGTCTGATGAGGACGAAGATTTCAAAGAGCAGACTAGGATTCTCAAGGCCAGCATACCGTTTGCTGTGGTGGGCTCCAACCAGCAGATTGAGGCCAAAGGGAAGAAAGTGAGAGGGCGTCTGTACCCATGGGGTGTAGTGGAGGTGGAAAACCCAGAACACAACGACTTCCTCAAACTTCGCACCATGCTAATCACTCACATGCAGGACCTGCAGGAGGTGACCCAGGACCTCCACTATGAGAACTTCCGCTCAGAGCGCCTCAAACGGGGCGGCAGGTTGTCTTCCCATGGTTACATTCTGCCTCTGTCGCCTGCGAAGGGTCCGGAACCTGAGGAAATGGACAAGGACATGATCCTCCTGGAGAAGGAGGCTGAGCTGAGGAGGATGCAGGAGATGATTGCTAAGATGCAGGCACAGATGCAGAAGCAGGGAGATGAAGATGCGTGAAAACCACGATGCTGACTTGTTTGAGCTCGACCCATCTAGACATGGTTGGAGAAGAGGAAGTGTTGCTAAATGTGGAGGAAGAGAGACTTGGTCCCTACATCATCCTGTTTGCCATTTTCTtagtttctttctcttttttgaaTTCATTATGTTTGTTTCTTTGATTGTTTAAAGCAGtattcagatttgtttttcaaatactgTTGCTAATATTCATCCAGTTATCTTTCCATTAACCTAAAATGAAGAACCACCATAAGTAattaagaaaaactttttttttctgttacgaAAGCCAAGTGCTGCTGGAAAGGACCATGAAGCACCTTTTAATAGTAGCTTAGCTCCAAAACACCTTAAAGGCATTTCTGTCCCATCTATAATTAAACAGACACTGTGAAAATACAAGCAGCTGTGGAATCGTGAGTCACGGTGATGGTTTTTGCACCTTGTTTTTGGAGAAATCGTTTTATACTGTTTGTAAGTGTTGCCAGAGAGATTGCTGATTTCTGAAGTACTTCTCTCTTCCCTGCATGAAGTCTTGAATTATAAGTGCTGTTCCCCAAACGGATGCAAAGCATAAAACTGTGACCCATGGTTCATTCCCTGTGCCGTCTGATGAAGGAGACGAGGCTTTTC

Function

symbol description
sept2 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in several processes, including cilium assembly; cytoskeleton-dependent cytokinesis; and regulation of exocytosis. Predicted to act upstream of or within cell division. Predicted to be located in several cellular components, including ciliary membrane; cleavage furrow; and midbody. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and synaptic vesicle. Is expressed in artery; notochord; and vein. Orthologous to human SEPTIN2 (septin 2).

GO:

id name namespace
GO:0017157 regulation of exocytosis biological_process
GO:0051301 cell division biological_process
GO:0034613 cellular protein localization biological_process
GO:0060271 cilium assembly biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process
GO:0032153 cell division site cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0031105 septin complex cellular_component
GO:0005940 septin ring cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko05131 Shigellosis
ko05100 Bacterial invasion of epithelial cells
ko04131 Membrane trafficking
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-911 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in several processes, including cilium assembly; cytoskeleton-dependent cytokinesis; and regulation of exocytosis. Predicted to act upstream of or within cell division. Predicted to be located in several cellular components, including ciliary membrane; cleavage furrow; and midbody. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and synaptic vesicle. Is expressed in artery; notochord; and vein. Orthologous to human SEPTIN2 (septin 2).

Ensembl:

ensembl_id ENSDARG00000027590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030827 False 2299 mRNA 0.44 13 22592139 22615366
TCONS_00030826 False 2260 mRNA 0.44 13 22592139 22615366
TCONS_00030828 True 1396 mRNA 0.45 8 22602301 22614949

Neighbor

gene id symbol gene type direction distance location
XLOC_015398 hfm1 coding upstream 40076 22531185 ~ 22552063 (+)
XLOC_015397 lrrc8da coding upstream 89888 22495274 ~ 22502251 (+)
XLOC_015396 pkn2 coding upstream 114998 22416275 ~ 22477141 (+)
XLOC_015395 zgc:56628 coding upstream 176943 22409249 ~ 22415196 (+)
XLOC_015394 hs2st1a coding upstream 193349 22363824 ~ 22398790 (+)
XLOC_015400 bokb coding downstream 24849 22640215 ~ 22650435 (+)
XLOC_015401 zgc:161973 coding downstream 44421 22659787 ~ 22677019 (+)
XLOC_015402 kif1ab coding downstream 79016 22694382 ~ 22758590 (+)
XLOC_015403 espnlb coding downstream 150126 22765492 ~ 22792460 (+)
XLOC_015404 rab6bb coding downstream 180128 22795494 ~ 22803665 (+)
XLOC_015392 CT956055.1 non-coding upstream 620730 21882881 ~ 21971409 (+)
XLOC_015388 NA non-coding upstream 1054867 21534038 ~ 21537272 (+)
XLOC_015385 NA non-coding upstream 1155738 21431725 ~ 21436401 (+)
XLOC_015384 dre-mir-26a-2 non-coding upstream 1216545 21375467 ~ 21375594 (+)
XLOC_015372 rxrga non-coding upstream 1815298 20725684 ~ 20776841 (+)
XLOC_015407 NA non-coding downstream 295826 22911192 ~ 22916384 (+)
XLOC_015408 NA non-coding downstream 369764 22985130 ~ 22992029 (+)
XLOC_015410 NA non-coding downstream 409955 23025321 ~ 23026978 (+)
XLOC_015414 NA non-coding downstream 540646 23156012 ~ 23184804 (+)
XLOC_015416 BX548024.3 non-coding downstream 642411 23257777 ~ 23257897 (+)

Expression


Co-expression Network