XLOC_015550 (colec12)


Basic Information

Item Value
gene id XLOC_015550
gene name colec12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31382590 ~ 31435158 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031086
AGAGCTTCAGTAAAGCACTGTGGTGCTGCGGCTGCTGCTGCTTTCACCTGGTTTTTCTTTAAGATATTCAGCCCAAGAAGAAAACAAGTGAACTAACAGACACCCTGCGGACTGCCAGCTTCTCTCTGGTTCTCGGGTTGCAGCCAGCAGGCAGAAGAGGACGCATCCTCATTCACCTCAAGTGGATTTCCATCGTGAACACGCTCTCATGGAGGGAGAGAAAAAGTGTGCGCACTGAGCAGAAGTTTGTTGAACATTGTTCGCGAATTGTTCCTGTAGTTTTACAAGCTAAGCACCAGTCATAGGGATTGAAAAGACCCTACGCATGTTTCAGGTGGAATATTAGTGAAAGTTCAGCGCTTATTCTTGGGTCTGCGCGTTGACATGAGATTGATGTGAAGGTTTGGCTCGTGACGGAACGGTGCACCTCAGTTTGACCACGATGAAGGACGACTTCAATGATGAAGAAGAAGTGCAGTCATTTGGCTACAAAAGGTTTGGTATCCAGGAAGGAAATGAATGCACTAAATGTAAAAACGACTGGGCCCTGAGGGTGGCGATTGCACTTCTGTATGTGCTTTGTGCACTGCTCACCATAGCTGTGGCTGTGCTGGGATACAAAGTGGTCCAGAGGATGGATAATGTAACAGAGGGTATGCAAAATTATGGAGGGAAAATCACGGCTGTAGAGACTGATCTTAAGAAACTTGATGATCAAACGGGAGAGAAGTCAGAAAATGCTACCAGTGAACTTCACTCATTCAAGTTGGAATTTCAGACATTGCAGAAGCAGCTCAGCGACGTTATTGTGAAGACTTCCAACAACAGAGCTGTTCTCAAAGAGCTACAGCTAGCTGGTGAGGACATGCAGAGTGGACATCTCTCGCTGCGAGACCTGCTGGAGAGCAATGCCAATGTCATCAGCAAAGTAAACCACACTTTGAACACATACAACAGTCTGATTGATGGATTAAAAACAGAAACGGCGAGACTCCAGTCAGATCTCCATGTACAGACAAGTGAACAGGGCCAAAACAGCCACAGCATCAGCACTCTAAACTTTACCCAGACCCAGCAGAGGAACCTCATCAGCTCCCTCCAGAGATCAGTGGAGGACACTGGCCAGGCTGTGCAGAAGCTTAAGAATGACTATCAGAGCCTCCAGCAGGTGGCTAGGCAAACCAAAGCAGATGCTGATTGGCTGAGAGAGAAGGTGCAGAACCTTCAGGCTTTAGCGGCTAATAATTCTCTGCTGACTCGCTCTAACAGTGACTCTCTAGAGGACGTAACCTCTCAGTTAACCACACTGTCAGAGCAGGTCCAGAACACTTCGACCATCACTGACAGCCATGATCAGAGCCTGCGTGAGCTCATGGACCAGCAGCGAGATCATGATAATGCCACCTCCATTAGATTTGATGCATTAGAGGCACGTCTTGACAGCAATGAGGGGGAAATGGACCGCATAACAGGGAATGTTAGCTTTACCACGCAGCTGCTCAGAGCGATCAGTACAGACTTGAATGGTCTGCGCACGTGCTCTGAGACGGTGACCCGACACTCAGAACTGCTGCATGGGCTCAACAACAGTGTGGCTGAAACCAGGGCAGAAAGCACAGAGCTCAAAGCCCAGCAGGAGGAACTCGCTGTCAGGCTTGACAAAGAGGTCAGCAGCCTTTCCATAGTTATGGATGAAATGAAACTGGTTGACAACAAACACTCGCAGCTCATCACAAACTTCACCATCCTTCAGGgtCCTCCTGGTCCAAGGGGTCCTCGGGGAGATAAAGGGTCCATGGGGCTACCTGGTAAAACTGGCCCGAAAGGTGAAAAGGGTGAAAAAGGAGCACCTGGTGATGCTGGACCTAAAGGAGAAAAGGGTCCAGCGGGACCTCCTGGTGTGCCAGGGTTGAAAGGGCCACCTGGATCAAGAGGAAGCCCTGGGCCAAAGGGTTCACGAGGATCTGGGGGCAGGCAAGGGCCTTCAGGGGAGAAAGGTGACCCTGGGATACCTGGTATGCCTGGAAGAGATGGTCAGCCTGGTCCTACTGGCCCACAAGGGCCACAGGGACTCAGAGGTCCAGCTGGACCTGCAGGACTAGAAGGAGCCCGTGGACCCGTAGGCCCCATTGGCCCACCAGGACCACCTGGATTACCAGGACTTCCTGCACCACCAATAGTTGTGCCACCAGTAGATCCACAAGGCTTTGTCAACCGCCAGGTAGCGCCGCCACCAACAACTACACCAGGATGTCCCCCTCAGTGGAAGGGCTTCAGAGAGCAATGCTATCACTTCTCAGCTCCAATGGAGAGTCTGAACTTTGATGAAGCCAAGGAAAGATGCAGCAACTTGAGTTCATCTATGCTGATTATCAATGATGAAGAAGAGCAGCTATGGATAAAGAGGCAGATTTCTGGAAAAGGCTACTTTTGGCTGGGCCTaaaatggaAACCTGGTCAGCCTGATAACTGGAGCCATGGTCATGAAGCTGGTGAGGACTGCGCAGGGTTGATACACGAGGCCAGTTGGAATGACTTTTTCTGCACAGAACGCATTGGTTTTATTTGTGAACGAACTAATGAATCCAAAGTTCCAGTTTTATAGCATctgttgaatgaatgaaaagagaaTATGATATGACAATCATAAAGACACTTGAGAAGGTTTCTGTCACAGTATCCTCTCGCTTTGGCCAGAGTGCAACATACAGTACGTGATAAACTCAAAAGTAAAGTCATCGACAATCACGACCAAGTCAATActgcaaactacacaaaaaacACTGATCACCAGTCACGTTAATGTTTAGATAAGTGAAAAGGCTGTAATGTATTGTAATCGTGTGACTGTAAATACCTGTCTTCCCTGTGTCATTAACAAAGCTGATGCCACATTACTCCAGTGCAATACAATGAAGCTTTGTAGCTGCTTTAATTGAAATGAAGCTTTGAACAGCCGAGCATAACGCTACAGTTAATATGTTTTAATGACTATAATCCAAAAATCGTTCACAACAGAGTTTTATATCATAAGTCTTGGAACATCATTGAtgtgattttatattaaaaaaattgataaggttttgaatttttgaaatatttgatTACGCAGTAGCTATGTATAAAATAGTTGTGTATTTGAACACATGTACATGTATGTAGTCATGATCAAAGACCATGtttttatctgaaataaaatatagtagGTATTTTTCAATATGCTTTTGACATTTTATCAGTATGTCTAAATGTGGAATGCAATGtctgtgttcaatacttatttcaaTCACACATACATTATGCATATACCgattttacagtatgtgtttatACTGTGTTTACTGTGACAGTGTAACAATAACTTGTATCTATTGATTAGTAATTTTGTCAGACATATTTAGAATAAGAATCAGTTGACTGTATTTTGATTgaatatttcctaaaaaaaaaaaaaagttattgtaaactataatattaataataagataaatacactcaccggccactttattaggtacgcctgtccaactgctcattaatgcaaaattctaatcagccagtcatatggcagcaactcaatgcatttaggcatgtagacatggtcaagacgagtTCAAGCAGTTCAaacagcatcagaatggggaagaaaggggattaaagtgactctgaatgtggcatgtttgttggttccagatgggctggtctgagtatttcagaaactgctgatctactgagattttcaagcacaaccgtctctagggtttacagagaatagtcagaaaaagagaaaatacccagtgagcgacagttctgtggtcgcaaatgccttgttgattccagaggaaaatggccagactggtttaagctgatagaaaggcaacagtaactcaaataatcactcattacaactgaggtatgcagaagagcatctctgaatgcacaaaacctcaaaccttgaggcagatgggcaacagcagtagaagaccacaccaaaggtgccactcctgtcagctaacaacaggaaactgaggctattcacacaggctcaccaaaattggacaacagaagattggaaaaacattgcctggtctgatgagtcttgatttctgctgcgacattcaggtggtagggtcagaatttaccAATTGAggatcatgtcaacgccacagcctacctcagtattgttgctcaccatgtccatccctttcgcagtgtacccatcttctgatggttacttccagcaggataacgcaccatgacataaagcttgaatcatctaagactggtttcttgaacatgacaatgagttaactgtacacaaatggcctccacaatcaccagatatcagtccaatagagcacatttgggatgtggtgaagattcgcatcatgtatgtgcagctgacagatctgcagcaactgagtgatgctatcatgtcaatatggaccaaaatctcagagaaatatttccagtagcttgttgaatctatgccatgaaggatcaaGGCAATTCTGAAGGGAAAAGGAGGTCTAACCcggtagtaaggtgtacctaataaagtggctggtaagtgtaCATTATGCATTTaccagttttgcagtatgtgtttatatattttttgtctaaGCACAAATATTATCCATAATCATTTATACTGATTTAGTCAAAATGCCCAATGTGACAGTGTAACAATAAATTGTATCTAATAATTTAGTAATCTTGTCAGACATGTTTAGAACAAGAATCAGTTgattgaattttaatttaatattgttgctaataaaaagtgaataataaactataattGATTCATTAGTTGTattaataataagacatataGATAGTTATAA

Function

symbol description
colec12 Predicted to enable low-density lipoprotein particle binding activity and pattern recognition receptor activity. Acts upstream of or within vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cardiovascular system; epidermis; mesoderm; musculature system; and periderm. Orthologous to human COLEC12 (collectin subfamily member 12).

GO:

id name namespace
GO:0001570 vasculogenesis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0030169 low-density lipoprotein particle binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0038187 pattern recognition receptor activity molecular_function

KEGG:

id description
ko04145 Phagosome
ko04131 Membrane trafficking
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-030131-9807 Predicted to enable low-density lipoprotein particle binding activity and pattern recognition receptor activity. Acts upstream of or within vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cardiovascular system; epidermis; mesoderm; musculature system; and periderm. Orthologous to human COLEC12 (collectin subfamily member 12).

Ensembl:

ensembl_id ENSDARG00000061140

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031086 True 4850 mRNA 0.43 10 31382590 31435158

Neighbor

gene id symbol gene type direction distance location
XLOC_015548 clul1 coding upstream 17931 31271082 ~ 31364659 (+)
XLOC_015549 NA coding upstream 89987 31291646 ~ 31292603 (+)
XLOC_015545 CT955962.3 coding upstream 164812 31100444 ~ 31217778 (+)
XLOC_015547 CT955962.1 coding upstream 274176 31107929 ~ 31108414 (+)
XLOC_015546 CT955962.2 coding upstream 281017 31101088 ~ 31101573 (+)
XLOC_015551 stam coding downstream 2389 31437547 ~ 31452606 (+)
XLOC_015552 si:dkey-32m20.1 coding downstream 19404 31454562 ~ 31457860 (+)
XLOC_015553 cacnb2b coding downstream 40614 31475772 ~ 31519662 (+)
XLOC_015554 NA coding downstream 102180 31537338 ~ 31540590 (+)
XLOC_015555 si:ch211-106h4.4 coding downstream 162683 31597841 ~ 31607080 (+)
XLOC_015544 NA non-coding upstream 298510 31075576 ~ 31084080 (+)
XLOC_015559 NA non-coding downstream 348854 31784012 ~ 31786282 (+)
XLOC_015564 NA non-coding downstream 431341 31866499 ~ 31868755 (+)
XLOC_015567 NA non-coding downstream 584484 32019642 ~ 32127930 (+)
XLOC_015568 NA non-coding downstream 713963 32149121 ~ 32188991 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_11489380_11502517 COLEC12 coding CI01000004 null 11489380 ~ 11502868 (+)