XLOC_016288 (BX664750.3)


Basic Information

Item Value
gene id XLOC_016288
gene name BX664750.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19560092 ~ 19565273 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032114
TCTGTTTTTCTCTTACAGCCTTAAGAGGTGTCAGTGGAGCAAAATCAGCTCCTCTtttaccaaaatccaacatcaaacCTGCAGTCCGGAGCTCTTCCCCATCTACAGCCAGTGTTTCAGAGGAACCAGATGATCAATCCAGCAAAGGTGTCAACGGGCTACTCCAGCATGAACCAGTCATGGTAAGGCATCTGTCCTAGAAGAATTCTGTGCTCTGGAATCTGCTGCAGACAAGCCCACATCAGATCACAGCATTCTGTGAAAAACAAAAGGAGAgGTCTCATCATCTGCTGTAAGACTCAGTGCAGAATCATCAGCGGAGTCATCTTGTGA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0031099 regeneration biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097586

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032114 True 333 lncRNA 0.47 3 19560092 19565273

Neighbor

gene id symbol gene type direction distance location
XLOC_016287 BX664750.2 coding downstream 921 19539680 ~ 19559171 (-)
XLOC_016286 BX664750.5 coding downstream 36409 19523586 ~ 19523683 (-)
XLOC_016285 pimr52 coding downstream 39402 19518520 ~ 19520690 (-)
XLOC_016284 BX664750.1 coding downstream 46796 19506311 ~ 19513296 (-)
XLOC_016283 NA coding downstream 177770 19379111 ~ 19382322 (-)
XLOC_016289 pimr51 coding upstream 9223 19574496 ~ 19630297 (-)
XLOC_016290 BX664750.7 coding upstream 14309 19579582 ~ 19579679 (-)
XLOC_016291 NA coding upstream 27181 19592454 ~ 19595061 (-)
XLOC_016292 BX088713.1 coding upstream 36423 19601696 ~ 19621644 (-)
XLOC_016293 BX088713.2 coding upstream 69721 19634994 ~ 19635091 (-)
XLOC_016282 BX511079.2 non-coding downstream 196931 19362798 ~ 19363161 (-)
XLOC_016295 NA non-coding upstream 559721 20124994 ~ 20148369 (-)

Expression


Co-expression Network