XLOC_016546



Basic Information


Item Value
gene id XLOC_016546
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34106830 ~ 34107985 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00033380
GTTCACTGGCATGTTTTATTATATCTTTTGTAGAGTGTTTTACTTTGTGCATTGGTGGCCCCCAAGTTGAACCATAGGAGGCAGTGCTTTCGGAGCCTGATGTGGGGGGAAACAACACCACTAATAGAGAAACCAGAAACGATGCGCGAACCTGGGTGGATCAAACAAGCAGTGAAACCAATCACAGCAGTGACATCACTTCAGCTTTTGTCCACGCTGTTTTGTCCAACAACCGCACACATAAAACATGTGTCACTCTACATGGGCAAAACACTGGATGTCAAGCACATCAGAAACAGTGCTCCCGGCCGCTCTGAGATTGATATCACAGGGTCTGTTTCTCCCCAAAAAATGTGTCCCCCTCCCTCCTTTCCCCCCCTCCTGGGAAAACAGCGACAACAAATTAGCCTTCTTTTATGTCAGAGCCTAAGGACGACACTTGGACAGCCCTGAGATTGTCCGCCCGAGTTCCCATGAACCTCACTAACCTTCTCTTTCAGTGCAGAAGGAAGCGGCCATTGTGCCAGCACCTGTTTCTGTGGAAATTGGTGAAATGATGGCTTTGTTAGGCATTGCCCAGG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00033380 True 581 lncRNA 0.49 2 34106830 34107985

Neighbor


gene id symbol gene type direction distance location
XLOC_016545 eif2b3 coding downstream 34612 34008798 ~ 34072218 (-)
XLOC_016544 ptch2 coding downstream 113194 33969212 ~ 33993636 (-)
XLOC_016543 NA coding downstream 180051 33843402 ~ 33926779 (-)
XLOC_016542 NA coding downstream 321640 33782659 ~ 33785190 (-)
XLOC_016541 atp6v0b coding downstream 419616 33681199 ~ 33687214 (-)
XLOC_016547 cenpl coding upstream 20753 34128738 ~ 34138400 (-)
XLOC_016548 si:dkey-21n10.3 coding upstream 109658 34217643 ~ 34218528 (-)
XLOC_016549 brinp2 coding upstream 272997 34380982 ~ 34555945 (-)
XLOC_016550 pappa2 coding upstream 878216 34986201 ~ 35103069 (-)
XLOC_016551 tnn coding upstream 1401433 35509418 ~ 35567110 (-)
XLOC_016540 BX548164.1 non-coding downstream 536791 33569922 ~ 33570039 (-)
XLOC_016537 NA non-coding downstream 825095 33271841 ~ 33281735 (-)
XLOC_016536 NA non-coding downstream 881914 33220032 ~ 33224916 (-)
XLOC_016552 NA non-coding upstream 1507410 35615395 ~ 35621867 (-)
XLOC_016553 NA non-coding upstream 1620604 35728589 ~ 35733752 (-)
XLOC_016555 NA non-coding upstream 1968211 36076196 ~ 36078638 (-)
XLOC_016619 NA non-coding upstream 2271254 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 2639193 36747178 ~ 36826293 (-)

Expression



Co-expression Network