XLOC_016692 (rbp1.1)


Basic Information

Item Value
gene id XLOC_016692
gene name rbp1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39028337 ~ 39036604 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032763
GAGTGCTGCACGACAGGAGCTGAACGACCAGGCATCAGGTCTgcattataaacacatttttaggACAACAATCGCGTTGCCTGTAGTTCAAAATGCCTGATTACACTGGTTACTGGAAAATGATCTCCAACAACAACTTTGAGTATCTCAAAGCTCTTgatGTTAATGTTGCTATCAGGAAAATTGCTATTTTATTAAGACCCGATAAAGATATCAGCCAGAATGGAGATCACTTTGTCATCAAGACTGTCAGCACATTTAAGAACTACGACATGGACTTTGTAGTTGGTCAGGAGTTTGAGGAAGACCTGGGTCCAGTTGATGGCAGGAAATGTATGACCACCATCACTTGGGATGGAGACAAGCTTGTGTGTGTCCAGAAAGGCGAGGTTGAAGGCCGGGGCTGGACCCAATGGATAGAAGGAGATGAACTTCATTTGGAACTGAGAGCAGGGGGAGTTGTGGGCAAACAGATTTTCAAGAAGTCTTAAACCAACGTTGTGTAGTGGTGCCCTCTGCTGGAGAAGAAACAAACAACCACCATAGTCAGAACTGCATCTGCCCATCCTCTCATTCATCAGTCTGCGTGTTTACATTTTCTGGAAGTGCTTAAGCTATTCCAGTGTGTTCAGTTAATATAACAGACACCCGTAATGCATATATATGAATTGCGTATGTACCAAGTATGGTTGGTTTTAGTGCTGTAGTCACTAAGATTAACCCCTTGAGAGATTCACTTCTGTTTAAAATACTTTCTCTAACATCTGAGGGTCTTTTTGGCTGGAGAAAAGATATCAGCTCTTGACCCCCTAAGCAAATCCAAATTGTTTTTTCTTTCCACAAGCTGGAAGGAGATAAATGTGGTGAGAGATGATGTGATTTTCAGTTCCTGCACCGCTGCATGTAATGGAGATGTGTGCtctaaaaaatgtacaaataacaACTGATTAAATGAAGAAAGACTAACA

Function

symbol description
rbp1.1 Predicted to enable lipid binding activity. Predicted to act upstream of or within retinoic acid biosynthetic process and vitamin A metabolic process. Predicted to be located in cytosol. Is expressed in gall bladder; oocyte; and ovary. Orthologous to human RBP1 (retinol binding protein 1).

GO:

id name namespace
GO:0002138 retinoic acid biosynthetic process biological_process
GO:0006776 vitamin A metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050421-2 Predicted to enable lipid binding activity. Predicted to act upstream of or within retinoic acid biosynthetic process and vitamin A metabolic process. Predicted to be located in cytosol. Is expressed in gall bladder; oocyte; and ovary. Orthologous to human RBP1 (retinol binding protein 1).

Ensembl:

ensembl_id ENSDARG00000018077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032763 True 968 mRNA 0.42 4 39028337 39036604

Neighbor

gene id symbol gene type direction distance location
XLOC_016691 rbp2b coding downstream 10499 39016066 ~ 39017838 (-)
XLOC_016690 copb2 coding downstream 13207 38997357 ~ 39015130 (-)
XLOC_016689 si:ch211-119o8.6 coding downstream 36024 38985489 ~ 38992313 (-)
XLOC_016688 prmt5 coding downstream 665320 38342298 ~ 38363017 (-)
XLOC_016687 slc7a8b coding downstream 691215 38318000 ~ 38337122 (-)
XLOC_016693 nmnat3 coding upstream 26150 39062754 ~ 39090286 (-)
XLOC_016694 BX248328.1 coding upstream 334207 39370811 ~ 39370927 (-)
XLOC_016695 cbln7 coding upstream 512772 39549376 ~ 39558643 (-)
XLOC_016696 spsb4a coding upstream 547462 39584066 ~ 39675829 (-)
XLOC_016697 NA coding upstream 573717 39610321 ~ 39612464 (-)
XLOC_016681 NA non-coding downstream 833858 38192959 ~ 38194479 (-)
XLOC_016680 NA non-coding downstream 882636 38144162 ~ 38145701 (-)
XLOC_016662 NA non-coding downstream 1212964 37813663 ~ 37815373 (-)
XLOC_016652 NA non-coding downstream 1611872 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 1619180 37405351 ~ 37409157 (-)
XLOC_016699 NA non-coding upstream 790100 39826704 ~ 39827511 (-)
XLOC_016700 NA non-coding upstream 794081 39830685 ~ 40033058 (-)
XLOC_016703 NA non-coding upstream 1157463 40194067 ~ 40196570 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_16654485_16672242 RBP1 coding CI01000004 null 16654448 ~ 16672310 (-)