CI01000004_16654485_16672242 (RBP1)


Basic Information

Item Value
gene id CI01000004_16654485_16672242
gene name RBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16654448 ~ 16672310 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16654485_16672242.mRNA
ATTTGGTCGCAGGGGAACAGCTATATCAGATCTTCTTTGGACAAACCCATCAGTAGAGTTTATCAGAAATGGCTGCTGATTATAACGGCTTCTGGAAAATGATCTCCAACGAGAACTTTGAAGAGTACCTGAAAGCTCTGGATGTAAATGTAGCTATTAGAAAGATTGCCACCCTGCTGAAGCCTGATAAAGACATCACTCAGAACGGAGATCACTTCATCATCAAGACTCTCAGCACCTTCAAGAACTACAACATGGACTTTGTGGTTGGTCAGGAGTTTGAGGAGGATCTGAGTGGAGTGGATGACAGGAAATGTATGACCACCATCACCTGGGATGGAGATAAACTGGTGTGTGTGCAGAGAGGAGAGATCGAGGGGAGGGGATGGACCCACTGGATTGAGGGAGATGAACTTCACTTGGTAGGCCACTTCTCATGCATTTCATTTCTAACGTCCTTGATGGTATTCCCTACCTGGAATAGAGCTCCTGGCATAAGAGAAAAACAGGTCATCAAGAAATTCTGTACCAAGGACACGAAGAAAATCACATATTTCACAATGCCTGCTGATTATACTGGATACTGGAAAATGATCTCCAATGATAACTTTGAGGAGTATCTCAAAGCTCTCGTGGCTCGAATCCTCGGTAGATTCGTTAAGTGGCCGTTAAGTCGGCCGTTACGCCAAATGGCGACCAGTGTGTTGAATGAGTTGAATCATTCACACTCAACCGATTCTTTAAAGTCGAAATTGACTCACATGCTCTTCATATCGGTCAGCATATCCTTATTCACAAACGAGACGACTTGTTCAGTAAAAATACCAACTCGTTCGGTGAAAGGGGCGTATTCGTTCAATGTTAATGTTGCTATCAGGAAAATTGCTGTTTTGTTAAAACCTGACAAAGATATCAGCCAGAATGGAGATCACATTATCATCAAAACTGTGAGCACATTCAAGAACTATGACATGGACTTTGTGGTTGGTCAGGAGTTTGAGGAAGACCTGGGTTCAGTTGATGGCAGGAAATGTATGACCACCATCACCTGGGATGGAGATAAACTGGTGTGTGTGCAGAAAGGAGAGATTGAGGGCCGGGGCTGGACCCACTGGATTGAAGGAGATGAACTTCATTTGGAGCTGAGAGCAGCGGGAGTTGTGGGCAAGCAGGTTTTCAAGAAGTCTTAAGCTTTTGTTGTGTAGTTGCGCCTCCTACTGGAAAAAA

Function

symbol description
rbp1 Enables all-trans-retinol binding activity. Involved in lipid homeostasis and vitamin A metabolic process. Located in cytosol; lipid droplet; and nucleoplasm.

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16654485_16672242.mRNA True 1227 mRNA 0.44 9 16654448 16672310

Neighbor

gene id symbol gene type direction distance location
CI01000004_16641559_16646208 RBP2B coding downstream 8209 16641402 ~ 16646239 (-)
CI01000004_16626200_16639382 COPB2 coding downstream 15066 16625936 ~ 16639382 (-)
CI01000004_16596848_16599652 NA coding downstream 53243 16596476 ~ 16601205 (-)
CI01000004_16459173_16459658 NA coding downstream 193117 16458970 ~ 16461331 (-)
CI01000004_16455194_16455607 NA coding downstream 198478 16455097 ~ 16455970 (-)
CI01000004_16676283_16687164 NA coding upstream 3677 16675987 ~ 16687690 (-)
CI01000004_16951444_16952520 NA coding upstream 278793 16951103 ~ 16952745 (-)
CI01000004_16954912_16955958 NA coding upstream 282497 16954807 ~ 16956268 (-)
CI01000004_16960069_16965947 NA coding upstream 287089 16959399 ~ 16966294 (-)
CI01000004_16972324_17046706 NA coding upstream 299937 16972247 ~ 17046706 (-)
G34915 NA non-coding downstream 78260 16564490 ~ 16576188 (-)
G35007 NA non-coding downstream 93672 16560548 ~ 16560776 (-)
G34995 NA non-coding downstream 121440 16529442 ~ 16533008 (-)
G34963 NA non-coding downstream 181159 16473061 ~ 16473289 (-)
G35071 NA non-coding upstream 77593 16749903 ~ 16782525 (-)
G35097 NA non-coding upstream 136301 16808611 ~ 16813559 (-)
G35111 NA non-coding upstream 176578 16848888 ~ 16851285 (-)
G35117 NA non-coding upstream 219024 16891334 ~ 16892563 (-)
G34999 NA other downstream 113170 16537195 ~ 16541278 (-)
G34982 NA other downstream 138474 16502725 ~ 16515974 (-)
G34934 NA other downstream 232942 16401745 ~ 16421506 (-)
G35053 NA other upstream 23461 16695771 ~ 16895093 (-)
G35137 NA other upstream 387912 17060222 ~ 17060790 (-)
CI01000004_17313828_17315129 HIGD1A other upstream 640703 17313013 ~ 17315727 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016692 rbp1.1 coding NC_007113.7 CM002886.2 39028337 ~ 39036604 (-)