G34995


Basic Information

Item Value
gene id G34995
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16529442 ~ 16533008 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39734
CTTGGTCAGTGCCTGTTCTGTCCTGTCAGGGGCGCTACGGTACGCCTGTGTGACATCACTGAGTGGGATGGGCATGTACTGCAGAGTGAAGTTACTGAGGAGAGAGCAGGAATGATTCAAGTTTTCCCCAAACATGGCAACACAAGAGATGAATAAGCTCCAGCAAGATAGAAAATGTGTCTAAAGAAACAAGTTGCTTTCTTTATAACTTTTTACAGAGTACTATGTTTCTTTCAACAGTTCTCAAAGCATTCTGTACTGAGAACAACCTTCTCACAATGATTAGTCCTCTGAATACAAGTTCAAGTCTGCTAAAAAAGTTTCTACATTAAATAATAGTTGTGTAGATCTCCAGGGAACAGAGGTGTTTCCAGAACAATGCTCTAATTGTGCATCACAGGCAGGTCGGAGAGGTGATGAAAGACTGTGCAATCACAAACAGATTCATGTAGGCATGGACTGAACTTCTTATTTTTTCCCAGTAACAGCATGCTGTGAGTAAGCTCGCAGAGGGATGAGTGAGTCAGTTCTCACATGGGTGAGTCTGCATGATACGAATGCGAGAGTGTGTGTGTGTGTGTGTCATACTGTTCTAAGGCTCGAGCCACATCTTGGAAACCCGTCGCACTTGTGTTATTCCGATCCCACGTCACACTCTGAGCGTGGTGTTGATCTGCAGGGCTTTACTGAGCATCCTTGCTCCTGTGTCATCAAGTCCGTTCCCACTCAAATCCACCTTCTTCAGGCAGGCGTTGCTGCCGAGAGCGTTCACGAGCACCGTGCCCCTCGAACGCAGCCTGGAGTCGGCCAGAGACAAGCTCTGCAGGGCCTGTCAAGAAGGAAGAGCAACCAGAGAGAGAGTGTACTGTATGTGTGTATGTGTATGTGAGCTTGCAATGTCTGTGATCTGTAAAAACAGTGCTTAATAATTGATCAAGCAAGGCGATATCTGCAGTGAGAGGGCTACGTGCCCTCAAGGAGAGAGATTAGAAAGAAAGAAGGAGAGAGAGTGAAAGAAGGATGGATGAATCACTAGTGCTGTAATACACACAGCAGACCGTTAGAAAGCTTTTGTACTCCGCGTGTGTTTGAAAGCAAAAAGGTGCGTACAGGAAACAAAGAGTAATGTCCATGTGTATGTGTGT
>TU39732
CTTGGTCAGTGCCTGTTCTGTCCTGTCAGGGGCGCTACGGTACGCCTGTGTGACATCACTGAGTGGGATGGGCATGTACTGCAGAGTGAAGTTACTGAGGAGAGAGCAGGAATGATTCAAGTTTTCCCCAAACATGGCAACACAAGAGATGAATAAGCTCCAGCAAGATAGAAAATGTGTCTAAAGAAACAAGTTGCTTTCTTTATAACTTTTTACAGAGTACTATGTTTCTTTCAACAGTTCTCAAAGCATTCTGTACTGAGAACAACCTTCTCACAATGATTAGTCCTCTGAATACAAGTTCAAGTCTGCTAAAAAAGTTTCTACATTAAATAATAGTTGTGTAGATCTCCAGGGAACAGAGGTGTTTCCAGAACAATGCTCTAATTGTGCATCACAGGCAGGTCGGAGAGGTGATGAAAGACTGTGCAATCACAAACAGATTCATGTAGGCATGGACTGAACTTCTTATTTTTTCCCAGTAACAGCATGCTGTGAGTAAGCTCGCAGAGGGATGAGTGAGTCAGTTCTCACATGGGTGAGTCTGCATGATACGAATGCGAGAGTGTGTGTGTGTGTGTGTCATACTGTTCTAAGGCTCGAGCCACATCTTGGAAACCCGTCGCACTTGTGTTATTCCGATCCCACGTCACACTTCTACAAGAAAGAAACAAACCATGACAGTCTTATTACAGAACTAAACCATTATGCATAATTTATTATTAATGAGCACACCCGAATGGAATCTGCATGCTTTTTGTACATTTCCTGCACTGATTTTGATGAAAAAATAAGCTGAGTTCTGTTTTAAATATGGTCAAATGTGATAAACAGAGAAAAGAATTAGGGTCATTGTCAAAATTTTTCATTTTCTAACTTGACGAAATTTTGGATTCAGTTCAGTTTTCTCCCATAAAAGCTGATGACTACCTGAGCGTGGTGTTGATCTGCAGGGCTTTACTGAGCATCCTTGCTCCTGTGTCATCAAGTCCGTTCCCACTCAAATCCACCTTCTTCAGGCAGGCGTTGCTGCCGAGAGCGTTCACGAGCACCGTGCCCCTCGAACGCAGCCTGGAGTCGGCCAGAGACAAGCTCTGCAGGGCC
>TU39733
CTTGGTCAGTGCCTGTTCTGTCCTGTCAGGGGCGCTACGGTACGCCTGTGTGACATCACTGAGTGGGATGGGCATGTACTGCAGAGTGAAGTTACTGAGGAGAGAGCAGGAATGATTCAAGTTTTCCCCAAACATGGCAACACAAGAGATGAATAAGCTCCAGCAAGATAGAAAATGTGTCTAAAGAAACAAGTTGCTTTCTTTATAACTTTTTACAGAGTACTATGTTTCTTTCAACAGTTCTCAAAGCATTCTGTACTGAGAACAACCTTCTCACAATGATTAGTCCTCTGAATACAAGTTCAAGTCTGCTAAAAAAGTTTCTACATTAAATAATAGTTGTGTAGATCTCCAGGGAACAGAGGTGTTTCCAGAACAATGCTCTAATTGTGCATCACAGGCAGGTCGGAGAGGTGATGAAAGACTGTGCAATCACAAACAGATTCATGTAGGCATGGACTGAACTTCTTATTTTTTCCCAGTAACAGCATGCTGTGAGTAAGCTCGCAGAGGGATGAGTGAGTCAGTTCTCACATGGGTGAGTCTGCATGATACGAATGCGAGAGTGTGTGTGTGTGTGTGTCATACTGTTCTAAGGCTCGAGCCACATCTTGGAAACCCGTCGCACTTGTGTTATTCCGATCCCACGTCACACTTCTGAGCGTGGTGTTGATCTGCAGGGCTTTACTGAGCATCCTTGCTCCTGTGTCATCAAGTCCGTTCCCACTCAAATCCACCTTCTTCAGGCAGGCGTTGCTGCCGAGAGCGTTCACGAGCACCGTGCCCCTCGAACGCAGCCTGGAGTCGGCCAGAGACAAGCTCTGCAGGGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39734 False 1145 TUCP 0.34 2 16529442 16533008
TU39732 False 1104 lncRNA 0.38 2 16529757 16533008
TU39733 True 831 lncRNA 0.47 2 16529757 16533008

Neighbor

gene id symbol gene type direction distance location
CI01000004_16459173_16459658 NA coding downstream 68426 16458970 ~ 16461331 (-)
CI01000004_16455194_16455607 NA coding downstream 73787 16455097 ~ 16455970 (-)
CI01000004_16449696_16450112 NA coding downstream 79509 16448416 ~ 16450248 (-)
CI01000004_16202928_16216455 PRMT5 coding downstream 312997 16202850 ~ 16216760 (-)
CI01000004_16183581_16194877 SLC7A8A, SLC7A8B, SLC7A8 coding downstream 334880 16183022 ~ 16194877 (-)
CI01000004_16596848_16599652 NA coding upstream 63468 16596476 ~ 16601205 (-)
CI01000004_16626200_16639382 COPB2 coding upstream 92928 16625936 ~ 16639382 (-)
CI01000004_16641559_16646208 RBP2B coding upstream 108394 16641402 ~ 16646239 (-)
CI01000004_16654485_16672242 RBP1 coding upstream 121440 16654448 ~ 16672310 (-)
CI01000004_16676283_16687164 NA coding upstream 142979 16675987 ~ 16687690 (-)
G34963 NA non-coding downstream 56468 16473061 ~ 16473289 (-)
G34952 NA non-coding downstream 85227 16444293 ~ 16444530 (-)
G34950 NA non-coding downstream 87318 16434975 ~ 16442439 (-)
G34869 NA non-coding downstream 227657 16236890 ~ 16302100 (-)
G34868 NA non-coding downstream 293114 16236357 ~ 16236643 (-)
G35007 NA non-coding upstream 27540 16560548 ~ 16560776 (-)
G34915 NA non-coding upstream 31482 16564490 ~ 16576188 (-)
G35071 NA non-coding upstream 216895 16749903 ~ 16782525 (-)
G35097 NA non-coding upstream 275603 16808611 ~ 16813559 (-)
G34982 NA other downstream 13783 16502725 ~ 16515974 (-)
G34934 NA other downstream 108251 16401745 ~ 16421506 (-)
G34796 NA other downstream 666009 15860613 ~ 15863748 (-)
CI01000004_15832789_15836192 NA other downstream 693526 15832573 ~ 15836231 (-)
G34633 NA other downstream 741860 15787386 ~ 15787897 (-)
G34999 NA other upstream 4187 16537195 ~ 16541278 (-)
G35053 NA other upstream 162763 16695771 ~ 16895093 (-)
G35137 NA other upstream 527214 17060222 ~ 17060790 (-)
CI01000004_17313828_17315129 HIGD1A other upstream 780005 17313013 ~ 17315727 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location