CI01000004_17313828_17315129 (HIGD1A)


Basic Information

Item Value
gene id CI01000004_17313828_17315129
gene name HIGD1A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 17313013 ~ 17315727 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_17313828_17315129.mRNA
ATTTTGTGTGTTTTCAGAGACTAATCTCTATCTCTTGAGGAAATGGCGAATCTTGTTTAATTGAAGCTGATAATAAGATCTACATCAAAAGGCTGTCATTGCTGTTCACATTACACATTTACATTAATTATTTAAGTTAAACCGTGTAAAGTCACTTTTTAAATGACCTATGTGCGTCGTTTGACCTTCATATAACATGTCAAGAGTATCGCTTTTGCTCTTCCTGATGAATTAAAGGAACGGACTGATTTCCTTGATCTTTACCGTAATACATTATTTGATGTATTATTAACCTCCTCTTGCTACGACACAGAAATTACAAAGTCACGAGGTCTTCTTCTTTTTCTTTTAAAATGGTAGGAGATGTCACTGTACAATATGGTTCATACGAATCTATTAATATGTATGTGTGTCTGCAAGAACTGTTAAACAGATCAGTTGTCCAAATTAGTGATTAGAATTTGATTAATTGGTGGATATTTGTCCATTTATTATTTGCCGTTTAATTTATTAAATGTGTAAAGAATCAGAGAATGGTGCTGTGGCCTTTCACTCATGACATCTGATCATGTTTTGTTATTGTTCCCTTTTAGTCAAGATGACCGCCTTGGAATACGAAGACAATGAATCCAAGTTCATCAGAAAAGCCAAAGAGAATCCGTTTGTCCCTATAGGGATGGCCGGGTTCTTCGGCATTGTGGCTTACAGGCTGTACAAGATGAAGAGTCGAGGAGACACGAAGATGTCTGTGCACCTGATTCACATGCGTGTCGCTGCGCAGGGCTTCGTGGTGGGAGCCATGACTTTAGGAGTGGTCTACTCCATGTACAGAGAGTACGTTCTTAAACCCGCTCAAGCACAGAAAGCTTTGGAGCAGAAGGCAATGGAAAAGTAAAGAGAAATGTGTTTGATTCCTGAGATATCCTTAATACTGCTTCATATTAAGGTGTCATTCTTTTTTTTTATTTATTGCTGACATAATTTAGGACTTTTTTTTTTTTTTAATAATAAATAATTTCTTTACACTGTTTCCTATTTAAACATTTAATAAA

Function

symbol description
higd1a Predicted to be involved in mitochondrial respirasome assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including axis; gill; musculature system; solid lens vesicle; and spleen. Orthologous to several human genes including HIGD1A (HIG1 hypoxia inducible domain family member 1A).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_17313828_17315129.mRNA False 1052 mRNA 0.36 3 17313671 17315727

Neighbor

gene id symbol gene type direction distance location
CI01000004_17292926_17304823 CCDC13 coding downstream 8848 17291086 ~ 17304823 (-)
CI01000004_17265394_17279344 TMIE coding downstream 32669 17265220 ~ 17281002 (-)
CI01000004_17122103_17127335 MYL4, MYL3, MYL13 coding downstream 186336 17121660 ~ 17127335 (-)
CI01000004_16972324_17046706 NA coding downstream 266965 16972247 ~ 17046706 (-)
CI01000004_16960069_16965947 NA coding downstream 347377 16959399 ~ 16966294 (-)
CI01000004_17329122_17345386 DSPA, DSP coding upstream 12439 17328166 ~ 17345386 (-)
CI01000004_17428398_17439651 SSX2IPA coding upstream 112511 17428238 ~ 17439651 (-)
G35340 NA non-coding downstream 11106 17302252 ~ 17302565 (-)
G35321 NA non-coding downstream 59671 17253792 ~ 17254000 (-)
G35314 NA non-coding downstream 66998 17246236 ~ 17246673 (-)
G35180 NA non-coding downstream 174031 17139435 ~ 17139640 (-)
G35129 NA non-coding downstream 219833 17052996 ~ 17093838 (-)
G35343 NA non-coding upstream 2942 17318669 ~ 17318889 (-)
G35345 NA non-coding upstream 32004 17347731 ~ 17428809 (-)
G35137 NA other downstream 252881 17060222 ~ 17060790 (-)
G35053 NA other downstream 418578 16695771 ~ 16895093 (-)
CI01000004_16596848_16599652 NA other downstream 696057 16596476 ~ 16601205 (-)
G34999 NA other downstream 772393 16537195 ~ 16541278 (-)
G34995 NA other downstream 780663 16529442 ~ 16533008 (-)

Expression


Co-expression Network