CI01000004_16972324_17046706


Basic Information

Item Value
gene id CI01000004_16972324_17046706
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16972247 ~ 17046706 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16972324_17046706.mRNA
GAATTGCGAAGCATGGTGACTCCACACTTCTGAATAACATCTACACAGATCTCTATATCACTCAGGGTGGCAGTGAACAGGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGGCGTCATGAATCTCAAGAGATTCAGGTTAAATGCACAAATTTGTTTGAAGCACCTGATCAAGACGAGGAGATCCGAACTGTACTGACAAAAGGAGTCGCTGGCATCGGAAAATCAGTCTCTGTGCAAAAGTTTGTTCTGGACTGGGCTGAAGGAAAAGAAAATCAAGATATCAGTTTCATATTTCCTCTTCCATTCAGAGAGATGAACTTAAAGGAGAAAGAAAAACTAAGTTTGATGGACCTTATAACTCATTTTTTCCCAGAGACAAAAGGACTGAACCTTACAAGAAGGAATCAGTTCAAAGTCCTGTTCATCCTTGATGGATTGGACGAATGTCGCCTTCCTCTGAAGTTTGATTGTAATGAGACGTGGTGTGATGTATCGTCACCAGCCTCTCTGGATGTTCTCCTAACGAACCTCATGAAGGGAAATCTGCTTCCTTCTGCTCTCATCTGGATCACCACCAGACCAGCAGCTGCCAGTAAGATTCCTCCTGACTGTATCGACCGGCTGACAGAGATACGAGGATTCAGTGACGCTCAAAAGGAAGAGTACTTCAAAAAAAGATTCACAGATCAGAATCAGGCCAACACAATCATTGATCATGTTAAAAAATCAAAGAGTCTCTTTATCATGTGCCACATCCCAGTCTTCTGCTGGATTTCAGCCACTGTTCTCCAGAACATTCTGGAAGAGAAAAGAAATAATGATGTGAAAAACAATCAGGCTGATGAGATCTCTAAAACACTACAGGAATCAAATACTGAAGACACTCCCAAGACTCTGACACAAATGTACACACACTTTCTCCGTTTTCAGATTCAGCAGAGCCGCCGAAAATATGATGGAGAATACACAGCAGATGTTTCCTGGGATAAAGAAGCCATCTTTTCACTGGGGAATCTGGCATTTCATCAGTTGGAAAGAAACAACGTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCATCAGTGTACTCAGGCATGTGTACCCAGATCTTTAAGGAGGAAACAGGGATCATTCTTGGTATCATGTACTGCTTTGTTCACTTGAGCATTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGTTTCTAGACATCAACAAGAAAAGTGTGTTTGTTCATGAGTCTACAGAACAGGAAAACAAAAATGAAACCATGATTGATTTTCTGAAGACTGCAGTGGACGAGGCGCTCAAGAGTGACAATGGACACCTGGACCTTTTCCTTCGCTTCCTCCTCGGTCTGTCACTCCAGTCCAATCGACGACTCTTACGGGGTCTGTTGACACAGCAAGACGACAATGACCAGATCAACAAGGAAATAGTTCAGTACATCAAGCAGAAATTAGAAGATAATCTGTCTGCAGAGAGATCCATCAATCTGTTCTACTGTCTGAATGAACTGAATGACCAAACTCTGGTGAAGGAGATTCAGACCCACCTTAGCAAAGGAAGTCTCTCATCTGGTGACCTTTCACCTGCCCAGTGGTCTGCTTTGGTCTTTGTGTTGTTGACATCAGAGAAAGAGCTGGAAGAGTTTGAGCTTCAGAAATTCAAGAAATCAGACGAGTGTCTCATTAGATTATCGGCAGTCATCAAAACCTCCAGAAGAGCTCTGTTAAGTGATTGTAACTTAACAGATAAAAGCTGTTCAGCTCTGGCTGCAGTTCTTGGATCAGATACCAATCTGAAAGAACTGAACATGAACAATAATAATCTGCAGGATTCAGGAGTGAAGCTTCTCTGCACTGGACTGAAGAATTTAAACTGTAAATTGGAGATACTTAGACTCTCTAACTGCAGTGTAACAGAAGAAGGTTATAAAGCTCTGGCTTCAGCTCTGAGATCAAACCCTTCACACCTGATAGAGCTGGATCTCACAGGAAATGATCCTGGACAATCAGGAGTGACACAGCTCAGTGATTTACTACGGGATCCAAACTGTCAACTGAAGACACTGAGGTTTTTGAGTGCTGCTGCAGATGAAGCCTGTCAGTATGTGGAGAGAGTTGTGGGTAAAAACCCGTTACTCCTGAGAGAGCTGAATCTGAGTGAACATGAACTAGGAGACACACGAGTGAATCAGATCGCTGCTCTACTGCAGGATAAACACTGTCGATTCAAAACACTGACTCTGTATAGATGCAGAATTACAGAGAAACAGTGTGTCATCCTGACTTCAGCTCTGAAATCAAGCCCGTCACACCTGAGAGAGCTGGACCTCCGTGGGAATATAATAGGAAACACAGGAGTGAAGCACTTATGTGACGTACTGAAGGATTCACACTGTAAACTGGAGAGATTGAGGTTAATCTCCTGTTATATGACAGATGAAGGTTGTTCTGCTCTGACTTCAGCTCTGAAATCAAACCTGTCACACCTGAGAGAGCTGAACCTGAGCGGGAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTGATCTACTGATGAACCCACAATTCAAGCTGGAGAAACTAGATCTGAGTGGATGCAGAATTACAGAGAAACAGTGTGTCATCCTGACTTCAGCTCTGAAATCAAACCCGTCACACCTGAGAGAGCTGGACCTGAGCGGGAATAAACTAGAAAACACAGGAGTGAAGCACTTATGTGACGTACTGAAGGATTCACACTGTAAACTGGAGAGCTTGAGGTTATTCTCCTGTGATATGACAGATGAAGGTTGTTCTGCTCTGACTTCAGCTCTGAAATCAAACCCGTCACACCTGAGAGAGCTGAACCTGAGCTGGAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTGATCTACTGATGAACCCACAATTCACGCTAGAGAAACTATTATTATCATCATCACAAGATTTCTTGCAGTGCAGAATTACAGAGAAACAGTGTGTCATCCTGACTTCAGCTCTGGAATCAAACCCGTCACACCTGAGAGAGCTGAACCTGAGCGGGAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTGATCTACTGATGAACCCACAATTCAAGCTGGAGAAACTACATCTGAGTGTTTGCAGTATTACAGAGAAACGGTGTGTCATCCTGACTTCAGCTCTGAAATCAAACCCGTCACACCTGAGAGAGCTGGACCTGAGCTGGAATAAACTAGGAAACACAGGAGTGAAGCACTTATGTGACGTACTGAAGGATTCACACTGTAAACTGGAGAGATTGAGTCTACTGAACTGTGGCATTACAGATGTTTCTTCTTTAACTCAGTCTTTGACTAACTCAAAAGCACTGCAGTTTTTAAAAGATCTTGATCTGAGTTTCAATAAGATCGGAGACTCAAAGCAGCGGCTCAGACACGTGCTACGAGACTCAAACTGTGACCTGAGGAAGAGAGCGCGGAGGGACTCCCGCACCGCCGTAGATGTGAGTCGCCGGACCCGCGGTCCGGAATGGAGAAGCATGCGTAACACCGCCGACAGAGTAGATTTTCAGTCATCTTACATACCTGATAGAGATCAATCTCCAAACACCTCTGACGGATGCTGTATATCATATCTGAATAGATGCAGTATTACAGAGAAACGGTGTGTCATCCTGACTTCAGCTCTGAAATCAAACCCGTCACACCTGAGAGAGCTGAACATGAGCTGGAATAATCTAGAAAACACAGGAGTGAAGCACTTATGTGACGTACTGAAGGATTCACACTGTAAACTGGAGAGATTGAGGGCCGTTGTATTACCTGTCAGTGACCGGTTCCCCCTGCTCTACAAAAGTGGCCTGGCACAATATAACTTATACAGTAATCCCAACAGAGAGACATTTGGTTTGCTCCTCAGAAAGTATAGCCTGTACAGCTATGATGAGAGAAGATTATTATGTTCCTCAGAACATCTTAGTATCTGGTACACCTTTGATGGACCGTTGTATTACCTGTCAATGACTGCTTCCCCCTGCTCTCTAGGAGTGTCTTTTTACACTATAACTTATACAGTAATCCCAATGTTCACAATCAGTCGTATTGGTTTTCATTGTAGTGTTCACTACAAAGGTCAGCTGTGGTTGGAGCACACACAGCCATCTGTTCTTTGTGAGGACTGCAAAATATGTTACATCATCAAAGGAGAAACACTTCATGAGACTGTTCCATTTTACGTGAAAAAGTTTTATGGCCCTGAGCAGAGAGACATTTGGTTTGCTCCTCAGAAAGTGTTAGCCTCTGGTACAACTATGATGTGTTCACCACCACACGTATGGGGTGTCATGCTCTCCTTTACTACGAAGGGTGAATATCAGGTTTGTGCGAATGTGACACTTGTTGATGACCTTGAAAACATCCAAACAGTCCATTTCAATATCACTGGGCAAAGAGAAGATTATTATGCTCCTCAGAACATCTTAGTGTCTGGACCGTTGTATTACCTGTCAATGACTGCTTCCCCCTGCTCTCTAGGAGTGAATTTGTTCACTGTAACTTATACAGTAATCCCAAAAACACTTCATGAGACTTTTCCAATGTACATAAAAAAGTTTAATGGTCCGGAGGGAGAGTATCAGATTTACCTGACTGTCGACATTATTGATGACCTTGGAAACAAAGTGACATTACAATCCAATGCCACTATAGAAGCAAAAAATTATGGCAGCGAGAAGACATTTTTTGTCCCACAGCTGGGAGGGCTTCTGTGTGGATGCAGTATTACAGAGAAACAGTGTGTCATCCTGACTTCAGCTCTGAAATTAAACCCGGCACACCTGAGAGAGCTGAACCTGAGCTTGAATAAAGTAGGAAACACAGGAGTGAAGCGCTTATGTGACGTACTGAAGGATTCACACTGTAAACTGGAGAGATTGAGAGCATTACAGAGTCTGAGTTCACATTATATATGTGCACAATTCTTCACCTTAAAGGCTCTGAAATCAAACCCGCCACACCTGAGAGAGCTGGATCTGAGTGTGAATGAACTAGGAGACTCAGGAGTGAAAAACCTCAGTGATCTACTGATGAACCCACAATTCAAGCTGCAGAAACTAGATCTGTATAGATGCAGTATTACAGAGAAACAGTGTGTCATCCTGACTTCAGCTCTGAAATCAAACCTGTCACACCTGAGAGAGCTGAACCTGAGCTGGAATAAAATAAAAAACACAGGAGTGAAGCACTTATGCGATGTACTGAAGGATTCACACTGTAAACTTGAAAGATTGAGTCTACAGAGCTGTGGCATTACAGATGTTTCTTCTTTAACTCAGTCTTTGACTAACTCAAAAGCACTGCAGTTTTTAAAAGAGCTCGATCTGAGTAAGAATATAATAGGAGACTCAAAGCAGCGGCTCAGTGACGTGCTACGAGACTCAAACTGTGACCTGAGAGTAGATAGTAATCTCTGAAATCATCATGAGAGGAGCGGTAATCATCAGGTGATCCACAGAAGAGTCTCACTACTGTGTCTATGAGGAGAAATAAA
>TU39836
GTGTCATCCTGACTTCAGCTCTGGAATCAAACCCGTCACACCTGAGAGAGCTGAACCTGAGCGGGAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTGATCTACTGATGAACCCACAATTCAAGCTGGAGAAACTACATCTGTATAGATGCAGTATTACAGAGAAACAGTGTGTCATCCTGACTTCAGCTCTGAAATCAAACCTGTCACACCTGAGAGAGCTGAACCTGAGCTGGAATAAAATAAAAAACACAGGAGTGAAG
>TU39851
GTGTCATCCTGACTTCAGCTCTGGAATCAAACCCGTCACACCTGAGAGAGCTGAACCTGAGCGGGAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTGATCTACTGATGAACCCACAATTCAAGCTGGAGAAACTACATCTGAATAGATGCAGTATTACAGAGAAACGGTGTGTCATCCTGACTTCAGCTCTGAAATCAAACCCGTCACACCTGAGAGAGCTGAACATGAGCTGGAATAATCTAGAAAACACAGGAGTGAAGCACTTATGTGACGTACTGAAGGATTCACACTGTAAACTGGAGAGATTGAGGTCAGTAACATTCTTCACATACAAGAATCAAAATGCTTAAAATCACTTCAACAGTTTAAACTAAAACACTTTATACTCAATATCTCACAATGAGTCTGAGTTCACATTATATTTGTG

Function

NR:

description
Zgc:174180 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16972324_17046706.mRNA False 5587 mRNA 0.43 33 16972247 17046706
TU39836 False 266 lncRNA 0.44 2 16974249 17013125
TU39851 True 433 lncRNA 0.41 2 16999442 17013125

Neighbor

gene id symbol gene type direction distance location
CI01000004_16960069_16965947 NA coding downstream 5953 16959399 ~ 16966294 (-)
CI01000004_16954912_16955958 NA coding downstream 15979 16954807 ~ 16956268 (-)
CI01000004_16951444_16952520 NA coding downstream 19502 16951103 ~ 16952745 (-)
CI01000004_16676283_16687164 NA coding downstream 284557 16675987 ~ 16687690 (-)
CI01000004_16654485_16672242 RBP1 coding downstream 299937 16654448 ~ 16672310 (-)
CI01000004_17122103_17127335 MYL4, MYL3, MYL13 coding upstream 74954 17121660 ~ 17127335 (-)
CI01000004_17265394_17279344 TMIE coding upstream 218514 17265220 ~ 17281002 (-)
CI01000004_17292926_17304823 CCDC13 coding upstream 244380 17291086 ~ 17304823 (-)
CI01000004_17313828_17315129 HIGD1A coding upstream 266965 17313013 ~ 17315727 (-)
CI01000004_17329122_17345386 DSPA, DSP coding upstream 281460 17328166 ~ 17345386 (-)
G35117 NA non-coding downstream 79684 16891334 ~ 16892563 (-)
G35111 NA non-coding downstream 120962 16848888 ~ 16851285 (-)
G35097 NA non-coding downstream 158688 16808611 ~ 16813559 (-)
G35071 NA non-coding downstream 189722 16749903 ~ 16782525 (-)
CI01000004_16596848_16599652 NA non-coding downstream 354633 16596476 ~ 16601205 (-)
G35124 NA non-coding upstream 4292 17050998 ~ 17051240 (-)
G35125 NA non-coding upstream 4843 17051549 ~ 17052637 (-)
G35129 NA non-coding upstream 6290 17052996 ~ 17093838 (-)
G35180 NA non-coding upstream 92729 17139435 ~ 17139640 (-)
G35314 NA non-coding upstream 199530 17246236 ~ 17246673 (-)
G35053 NA other downstream 77154 16695771 ~ 16895093 (-)
G34999 NA other downstream 430969 16537195 ~ 16541278 (-)
G34995 NA other downstream 439239 16529442 ~ 16533008 (-)
G34982 NA other downstream 456273 16502725 ~ 16515974 (-)
G35137 NA other upstream 13516 17060222 ~ 17060790 (-)
G35089 NA non-coding upstream 315 17013440 ~ 17025152 (-)

Expression


Co-expression Network