G35111


Basic Information

Item Value
gene id G35111
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16848888 ~ 16851285 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39877
CTCCGGAGGCTTCCAGAGATCAGCGATTGTACAAACTGTACAGACAGTAACGATGGTGTCGATTTTACCATATCAACCCGACCACGAGTCCGATGATGATTGAAGAACATTGGACATTGGAAGAACTAGTTATTCAACCCAAACCTCCATAGCAAGGACGACTTGAGCAGGACGTTTCTCAGTGATACACTTCTCCTTTTGACGTATATTATGAGATGTTGCAACTGTAATTCCTCTACATCAGCATTAACAAGTAGTCTTTCCATGCTCATATTCAATCAGGAACATATTCTAACATGGACAACAGTTTATTTCTCCTGATGAGGTGAAAATGGCCTCTGATTAAACTGTTATTTCCACCGTGCCAGGGTCCGCACTTAATAGAACAATTCAAAGCACTGTAGCAATTAAAATGAAACAACAGCCATGGAGCCATTTTTCATGATGGATTTTACTATTAATTATGGCCTACGGTTGTTGGTCTGCTACAACACCCAACACACACACATCGCTATCTCAATGTTACAGCGTCTTGAAGAGTAACGTTGTTTCAACCATAAATGCAAGGTCAACTGATACAAAGCTCTGAGTCCCTTAATGAATGAGGTTGTATTATGAACATTAAAACATAAACAAATCACTGTTTATGAGAGAGTGGGAGGGCCTACTTACTCGTTTGAAAGTTAATTACAAAATTATGACCTCTAGTAGTGGTCAGACTGGACTTTATCTTCCGCTACTGTACGTACAAAACATCATTTGGTAAACACCGACCTGTAAAACTGAATCACAAAAAGACGTTTGCCCGAAAAAGGATTCAAACTTCACAGATCTCATTTTGGTGGTTGAGCATCAACACATGATTCACAGAACACAAATTTAAGATAATACTACTGTAGATGGTAAATTGTTAATCAAAAAAATCAAATAAATAAATGTGTGTATACATTAGGGGTGTATCGGTACATTCGTCCCGAACCGTCACGCTAGGCTACAGGCATCACAGTTCAGTGCATACAGTCAGACGACGAATACAGTCAGTCACAGGCGATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39877 True 1054 lncRNA 0.34 3 16848888 16851285

Neighbor

gene id symbol gene type direction distance location
CI01000004_16676283_16687164 NA coding downstream 161198 16675987 ~ 16687690 (-)
CI01000004_16654485_16672242 RBP1 coding downstream 176578 16654448 ~ 16672310 (-)
CI01000004_16641559_16646208 RBP2B coding downstream 202649 16641402 ~ 16646239 (-)
CI01000004_16626200_16639382 COPB2 coding downstream 209506 16625936 ~ 16639382 (-)
CI01000004_16596848_16599652 NA coding downstream 247683 16596476 ~ 16601205 (-)
CI01000004_16951444_16952520 NA coding upstream 99818 16951103 ~ 16952745 (-)
CI01000004_16954912_16955958 NA coding upstream 103522 16954807 ~ 16956268 (-)
CI01000004_16960069_16965947 NA coding upstream 108114 16959399 ~ 16966294 (-)
CI01000004_16972324_17046706 NA coding upstream 120962 16972247 ~ 17046706 (-)
CI01000004_17122103_17127335 MYL4, MYL3, MYL13 coding upstream 270375 17121660 ~ 17127335 (-)
G35097 NA non-coding downstream 35329 16808611 ~ 16813559 (-)
G35071 NA non-coding downstream 66363 16749903 ~ 16782525 (-)
G34915 NA non-coding downstream 272700 16564490 ~ 16576188 (-)
G35007 NA non-coding downstream 288112 16560548 ~ 16560776 (-)
G35117 NA non-coding upstream 40049 16891334 ~ 16892563 (-)
G35089 NA non-coding upstream 162155 17013440 ~ 17025152 (-)
G35124 NA non-coding upstream 199713 17050998 ~ 17051240 (-)
G35125 NA non-coding upstream 200264 17051549 ~ 17052637 (-)
G34999 NA other downstream 307610 16537195 ~ 16541278 (-)
G34995 NA other downstream 315880 16529442 ~ 16533008 (-)
G34982 NA other downstream 332914 16502725 ~ 16515974 (-)
G34934 NA other downstream 427382 16401745 ~ 16421506 (-)
G35137 NA other upstream 208937 17060222 ~ 17060790 (-)
CI01000004_17313828_17315129 HIGD1A other upstream 461728 17313013 ~ 17315727 (-)

Expression


Co-expression Network