CI01000004_16954912_16955958


Basic Information

Item Value
gene id CI01000004_16954912_16955958
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16954807 ~ 16956268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16954912_16955958.mRNA
ATGTTTCACACGTGGTTTTCTGCAATACATTTAAACAAATATATTCTTTATTTCCTCATAAGATGTGTGTCATTAGTTAAACATCAACCCAACAGAGATATATCAGGAGTTTTGGGAATTTCTGGAACAAATACATGTAAGTGTCTTGTGCAGGGCTGTAGGGAACCTTCAACAGAAGCCCATTAATATTCAGTTTTTTCACCAACAGTTGCAGTGCAGTTCCTATATACTCTGGTAATTAACACATCAAGTAGCCAGCTCATCATAGGAAAGTGTTCAAGTGGTGTGACTGCAAAACTTTAAGGTAAAGATGTCCTGCACCATTCTGTATCCGCTGCTGCTTCTCCTGTTCAGCTGTGCCTGTATTGCTGAGGTCCAGCAGGAAGAGAACGAAGTGCAGGCTGAGAGTCCCGAGCGTTTGAATGCAGAACAAAGAGGTGCTGTTTTGACTTCTGGCGAGTGTCAGCAACACTTTCTCACAGTGATCTACACTGAGCTAACAGAGCTGAAATCCACTGTGAGTTCTCTGAAGAACAGACTGGAGGTCACTGAGAAACAACTGGAGCACACTGAGAAACAACTGGAGGTCACTGAGGAACAACTGGAGCAGCTCAGGAGAAACGATTATAAAGTGGCATTTGCCGCCACACTTGGACCCATTGGTGATCTTGGACCTTTCAACACTGAGATCACTCTAGTTTACAAAAAGGTCTTTGTGAATGAAGGAGGAGCTTACAACCCAACCACTGGTATCTTCACAGCACCAGTTAAAGGTGTCTATTTCTTCTCTGTCTCTGGACGTCACCGCTCAAACAGACTAATGGATCTAAGACTCTTTAGAAATGGACAACAGATGATAAATGTTATTAATCATGCTCTAGGTGAACGCTACGAAGCAGCATATAATTCAATCTCTTTGAATCTAGAGAAAGGAGATCATGTCTATGTGCGTCTCCTGCACAATACATGGGTCTTTAATAATGAAAATGACTTAACTTCATTTGCTGGCCATTTACTCTATTCTCTTTGAGGTCTTATTAAATTCATGAAGTTCAACATACTTCTCAACAAGTCTTAACTGCAGGTGATAAAGATTTTTTAAGACAAGTGCTGATTCACTGAAGAGTAAAATAAA

Function

NR:

description
LOC560655 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16954912_16955958.mRNA True 1135 mRNA 0.41 3 16954807 16956268

Neighbor

gene id symbol gene type direction distance location
CI01000004_16951444_16952520 NA coding downstream 2062 16951103 ~ 16952745 (-)
CI01000004_16676283_16687164 NA coding downstream 267117 16675987 ~ 16687690 (-)
CI01000004_16654485_16672242 RBP1 coding downstream 282497 16654448 ~ 16672310 (-)
CI01000004_16641559_16646208 RBP2B coding downstream 308568 16641402 ~ 16646239 (-)
CI01000004_16626200_16639382 COPB2 coding downstream 315425 16625936 ~ 16639382 (-)
CI01000004_16960069_16965947 NA coding upstream 3131 16959399 ~ 16966294 (-)
CI01000004_16972324_17046706 NA coding upstream 15979 16972247 ~ 17046706 (-)
CI01000004_17122103_17127335 MYL4, MYL3, MYL13 coding upstream 165392 17121660 ~ 17127335 (-)
CI01000004_17265394_17279344 TMIE coding upstream 308952 17265220 ~ 17281002 (-)
CI01000004_17292926_17304823 CCDC13 coding upstream 334818 17291086 ~ 17304823 (-)
G35117 NA non-coding downstream 62244 16891334 ~ 16892563 (-)
G35111 NA non-coding downstream 103522 16848888 ~ 16851285 (-)
G35097 NA non-coding downstream 141248 16808611 ~ 16813559 (-)
G35071 NA non-coding downstream 172282 16749903 ~ 16782525 (-)
CI01000004_16596848_16599652 NA non-coding downstream 337193 16596476 ~ 16601205 (-)
G35089 NA non-coding upstream 57172 17013440 ~ 17025152 (-)
G35124 NA non-coding upstream 94730 17050998 ~ 17051240 (-)
G35125 NA non-coding upstream 95281 17051549 ~ 17052637 (-)
G35129 NA non-coding upstream 96728 17052996 ~ 17093838 (-)
G35053 NA other downstream 59714 16695771 ~ 16895093 (-)
G34999 NA other downstream 413529 16537195 ~ 16541278 (-)
G34995 NA other downstream 421799 16529442 ~ 16533008 (-)
G34982 NA other downstream 438833 16502725 ~ 16515974 (-)
G35137 NA other upstream 103954 17060222 ~ 17060790 (-)
CI01000004_17313828_17315129 HIGD1A other upstream 356745 17313013 ~ 17315727 (-)

Expression


Co-expression Network