CI01000004_17265394_17279344 (TMIE)


Basic Information

Item Value
gene id CI01000004_17265394_17279344
gene name TMIE
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 17265220 ~ 17281002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_17265394_17279344.mRNA
ATGAACGGACGAGTTTTAGTGTTCATATTGGACAATTTCCCTCATATTCTCCATTGTTGCAGCTCCTCTCTTCCCAGTCTGTCAGTAACGCTCTGTTTAGTTTCTGTCTCTGTGAAGCCCCTCCTTCTGAAAAGCACATTGTGCTCTGATTGGTCGGCTGGAGCAGTGCTTCAAGCGTATTTGGGAATGTCCTGCCCCTTACCATAACCACCAGTTTCAACACACTACTAACTAAGGGGCCATTTACACGACACCGTTTTCAATTAAAAATGGAAACCTTTTTATGCGTTTTGGCCGTTCATTTTCACGACAGCGGCATTTTGGTGGCCTGAAAACGCAAACTTTTGAAACTGGGTTTCAAAGTGCAAGTTTGCCATGTAAACAACAAAAACGTGAATCTGTGAAAATGATGACTTCATGCACATGCGCATTATATGTTCAGTCTATAGTGTTTCATCGCCATCTAATGGCCTGCCAGCAGAATGCAGCGTTTTTAGACATTTTCACGGATTCGTATGAATGGAGATAGTTTTGAAAATGGTGTCGCCTGTATGCGGAAAACTCAAAGGAAAAACGTCTCCGTTTTAAGCATATCGTTGTCGTGTAAACATACCCTCACTCAACCAGGCCCCGCTCCACTCTGCGTATGAATTATTTAAATGAGGAATATTGTGACGTGTTCATTCCCAGAAGAAAACTCAATGTTTCAGGGAGTTCAGAATCAGTGTGCACAGTGATATAGAGAATAACTCCCTTTGTAGGGACTTTGTGTTTTGAAACTTTGCAGAGCTTTTTCATGCTCAAACAGCAACATTACACACTAAATAAAGATGAACGTGGAAAAAAGCAGAATAGCTCCTAAAGCCGTGACACACCAAGTCACATGAGCCCTTTTTTCTAAGAGTTTATGGAGCTGGTTATGTGATGCAACCAGTCAAAAATGTATTTGTTTACAAATTATGCACAATGATTTAAGGTGTTTTGAACTGTGCAAAAATATGTCTTAATTAATAATATGCCGCTGTGCAAAGAAATGAAGATTAAAAACTTGGTGTTTTACTGCCACTAGTGTTCATTTCAGCTGAAAACCACAGCGAATTTTTGCAAATATGTAGGTAGAGGCATGTTTTTACAGTGAGGCTATTTTAGAAAAAAGCAAAAAATGTCAGTATTTAACAGTAGACATTTGCTTTCAGTAAATTCTCCTTATCTCAGTGGACAGCTGAACAACTCGTTCACGTAATTATTGGAAAACCTGTTGGCCAGGCGTTGTATTAACATGAATGCGTGATCAAAATACAGAGTGTCTCCAGAGTGTCACACAACTCCTCTGATCTCATTGTGTCCTTCCGTGTAACTCCCTTCCCCCCACAACTCTCGTAACCTCTCTGTGCTCCGGGTGGCAAGGCTGTAAATGACACCAGGGCTATTAATTAATTAATGGCCTTTAGCCGAGTGGCTGGCTCGTAGTGTCCCTGTGGAGGGCTGGAAGATTGGGAGCAGTAGGACAGAGACCAGAGCAGCGTTAATGTAGGGGAGGAGGTGGTGGATATTTCGCACTGATCGACTATCAATCACCTGGACTATTGTGGTCCTGCGCAGTTTTCCGGGCAGAAGCAGCAGGGGGAGGGATGAGGCGTGGGAGAAGAAGAGGGAAAATGGCGATGGAGGGGCCTAGGCATCAACCGCCAAGCCTCGTCCCATTGCTGATGAGCGTGACGGCGGTGTTGATCTCACACCACGTCTTCAATGCGGCTGCCCAGATACCAGACCCAGAGCTCCTGCCAACAGACCCTCCAAAGAAGCCCGATCCGGTCACCTCAGAAACAGTGGTGTTTTGGGGTCTTCGATTATGGCAGGTTGTTGGCATTTTCTCCATGTTCATCCTAGCAATTATAATAACTCTGTGCTGTATCTTCAAATGCCGAATTCCACGAACGAAAAAAGAGATCGAGGCTCGGCATGCACAAAGACTAGCTGCGAAAACGTACGCCAACACACTGGAGACGGTGCCCCCCCTCAACGAGCTCACAGACGTGCCGGGAGCTGAAGTGTCAGATCTGTCTTTTTCTATTGGTATTGATCTTTGCCTCTGCTTATCTGTATTCCTTTCCCTCTTTTCACTACCCTTGTGTGTTTACTCAGCTCTTGCGGAAACACCAGCGCTGCAGACAGTCTCTGAGCAGCCTGCACTCCTGATGGCTTAGAGTAGAAAAGGCTTTTAAGACTATATATGAATCTGGTGAAATGTGCTGCTCGCAGTGTTCTCGAGGTTGTGTTTTGCCTGCTGTTAGAATCTGCTGTCAGTAGATGTAAGTGAAAGATGCAAGTGTAAATGAATCCTTACAAAATTCAGGCTTGAGTGCATCTTAGAAAATATA

Function

symbol description
tmie Acts upstream of or within posterior lateral line neuromast primordium migration; sensory organ development; and sensory perception of sound. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and otic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 6 and sensorineural hearing loss. Orthologous to human TMIE (transmembrane inner ear).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0048839 inner ear development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_17265394_17279344.mRNA True 2381 mRNA 0.44 5 17265220 17281002

Neighbor

gene id symbol gene type direction distance location
CI01000004_17122103_17127335 MYL4, MYL3, MYL13 coding downstream 137885 17121660 ~ 17127335 (-)
CI01000004_16972324_17046706 NA coding downstream 218514 16972247 ~ 17046706 (-)
CI01000004_16960069_16965947 NA coding downstream 298926 16959399 ~ 16966294 (-)
CI01000004_16954912_16955958 NA coding downstream 308952 16954807 ~ 16956268 (-)
CI01000004_16951444_16952520 NA coding downstream 312475 16951103 ~ 16952745 (-)
CI01000004_17292926_17304823 CCDC13 coding upstream 10084 17291086 ~ 17304823 (-)
CI01000004_17313828_17315129 HIGD1A coding upstream 32669 17313013 ~ 17315727 (-)
CI01000004_17329122_17345386 DSPA, DSP coding upstream 47164 17328166 ~ 17345386 (-)
CI01000004_17428398_17439651 SSX2IPA coding upstream 147236 17428238 ~ 17439651 (-)
G35321 NA non-coding downstream 11220 17253792 ~ 17254000 (-)
G35314 NA non-coding downstream 18547 17246236 ~ 17246673 (-)
G35180 NA non-coding downstream 125580 17139435 ~ 17139640 (-)
G35129 NA non-coding downstream 171382 17052996 ~ 17093838 (-)
G35125 NA non-coding downstream 212583 17051549 ~ 17052637 (-)
G35340 NA non-coding upstream 21250 17302252 ~ 17302565 (-)
G35343 NA non-coding upstream 37667 17318669 ~ 17318889 (-)
G35345 NA non-coding upstream 66729 17347731 ~ 17428809 (-)
G35137 NA other downstream 204430 17060222 ~ 17060790 (-)
G35053 NA other downstream 370127 16695771 ~ 16895093 (-)
CI01000004_16596848_16599652 NA other downstream 647606 16596476 ~ 16601205 (-)
G34999 NA other downstream 723942 16537195 ~ 16541278 (-)
G34995 NA other downstream 732212 16529442 ~ 16533008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location