Gene
RNA
| Item | Value |
|---|---|
| gene id | G35007 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 16560548 ~ 16560776 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU39748 | True | 229 | lncRNA | 0.36 | 1 | 16560548 | 16560776 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_16459173_16459658 | NA | coding | downstream | 99217 | 16458970 ~ 16461331 (-) |
| CI01000004_16455194_16455607 | NA | coding | downstream | 104578 | 16455097 ~ 16455970 (-) |
| CI01000004_16449696_16450112 | NA | coding | downstream | 110300 | 16448416 ~ 16450248 (-) |
| CI01000004_16202928_16216455 | PRMT5 | coding | downstream | 343788 | 16202850 ~ 16216760 (-) |
| CI01000004_16183581_16194877 | SLC7A8A, SLC7A8B, SLC7A8 | coding | downstream | 365671 | 16183022 ~ 16194877 (-) |
| CI01000004_16596848_16599652 | NA | coding | upstream | 35700 | 16596476 ~ 16601205 (-) |
| CI01000004_16626200_16639382 | COPB2 | coding | upstream | 65160 | 16625936 ~ 16639382 (-) |
| CI01000004_16641559_16646208 | RBP2B | coding | upstream | 80626 | 16641402 ~ 16646239 (-) |
| CI01000004_16654485_16672242 | RBP1 | coding | upstream | 93672 | 16654448 ~ 16672310 (-) |
| CI01000004_16676283_16687164 | NA | coding | upstream | 115211 | 16675987 ~ 16687690 (-) |
| G34995 | NA | non-coding | downstream | 27540 | 16529442 ~ 16533008 (-) |
| G34963 | NA | non-coding | downstream | 87259 | 16473061 ~ 16473289 (-) |
| G34952 | NA | non-coding | downstream | 116018 | 16444293 ~ 16444530 (-) |
| G34950 | NA | non-coding | downstream | 118109 | 16434975 ~ 16442439 (-) |
| G34869 | NA | non-coding | downstream | 258448 | 16236890 ~ 16302100 (-) |
| G34915 | NA | non-coding | upstream | 3714 | 16564490 ~ 16576188 (-) |
| G35071 | NA | non-coding | upstream | 189127 | 16749903 ~ 16782525 (-) |
| G35097 | NA | non-coding | upstream | 247835 | 16808611 ~ 16813559 (-) |
| G35111 | NA | non-coding | upstream | 288112 | 16848888 ~ 16851285 (-) |
| G34999 | NA | other | downstream | 19270 | 16537195 ~ 16541278 (-) |
| G34982 | NA | other | downstream | 44574 | 16502725 ~ 16515974 (-) |
| G34934 | NA | other | downstream | 139042 | 16401745 ~ 16421506 (-) |
| G34796 | NA | other | downstream | 696800 | 15860613 ~ 15863748 (-) |
| G35053 | NA | other | upstream | 134995 | 16695771 ~ 16895093 (-) |
| G35137 | NA | other | upstream | 499446 | 17060222 ~ 17060790 (-) |
| CI01000004_17313828_17315129 | HIGD1A | other | upstream | 752237 | 17313013 ~ 17315727 (-) |
