XLOC_016959 (rx2)


Basic Information

Item Value
gene id XLOC_016959
gene name rx2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55833425 ~ 55861351 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033113
ATGCATCTGTCACCAGATACCATGAACATGGTGGACGATGGCTGCCTCTCCACAGAAAGCTACCACGACCTGGGCAAAGGTGGCGTTTCAGGCATCAGCAGCCGCGTCCACAGCATCGACGTCATTCTGGGCTTCAGTAAAGACCAGGATCCTCTGCTGGAGCCCATCGGGACGCATAAAGTGGACGAAGACCAGCTGGAAGAACAGGAGAAACAAGTGAATTCTGATCCATACAGTCACCTGCAGATCCCAGACCAGACCCAGCAGCAGCAATCGGTGTACCATGACACCGGACTTTTCTCCACGGACAAATGCGATGCAGATTTGGGAGACCCGCGGAGCAACGTGGAGAGCGACAGCCGTTCCCCTGACATCCCAGATGAGGATCAGCCGAAAAAAAAGCACAGACGCAACAGAACCACCTTCACCACCTATCAGCTACACGAGCTGGAGCGCGCCTTCGAGAAATCCCACTACCCGGACGTGTACAGTCGAGAAGAGCTGGCCATGAAAGTCAACCTGCCTGAAGTTCGAGTTCAGGTGTGGTTTCAGAATCGGCGCGCAAAATGGCGAAGGCAAGAAAAAATGGACACGGGCACCATGAAGCTCCACGACTCACCCATACGGTCCTTCAACCGACCACCAATGGCACCAAATGTGGGTCCTATGTCTAACTCTCTCCCGCTGGACCCCTGGCTGTCCTCGCCACTGTCCAGTGCCACACCAATGCACAGCATCCCGGGGTTTATGGGTCCTGGACAGAGCCTCCAGCCCACCTATACTGCTCACCCTGGCTTTCTCAACACGTCTCCAGGCATGATGCAGAATATGCAGCCAATGCCACCACCGCCCTACCAATGCCAACCAGTGTTTAATGACAAATACCCGCTGGAAGACGTCGACCGCAGTTCTAGTATCGCAGCTTTGAGGATGAAGGCCAAGGAGCACATTCAGTCGATGGATAAAACCTGGCAACCCATGTAAAAATGGAGAACGTTATTCAATGTTTTATTGGGATCTCATAGCAATGAGGGGATAgacattactgtaaaaaatgcttggttGTTTTAGGGACTTTAAGGATGAAGGCCAAGGAGTGCATTCAGTCCATGGATAAAACCTGGCTACCCATGTAAAA
>TCONS_00033114
AGTTTTCATGGCTTCATCCTAAAGATCAAGACCTCCATATGCTGCGCCGCCAACGGGATGTTTCCGAGTGCGCCGGAATTTATGACCAGTTTTTTgggcaactttttttttattttttatttttgcacgcAAAGGGCTATTTTAGTGATGAACTGAAAGTGGGTGAGAACGTTTGTGAGCATGCATGgacattaaacaataactttgaGGGAATCAGAAGAGACAGAAAGTTGGAGGAAACGCCCTCTGAAAGGGAATCTCAGGCACAAACCAGAACCTGATTCTCTTCTGGATTTGCACCCTTTCATTGACCCTGTTTCCTGGAAGAGACTTACTGTAAGAGCAGATTGGATGCATCTGTCACCAGATACCATGAACATGGTGGACGATGGCTGCCTCTCCACAGAAAGCTACCACGACCTGGGCAAAGGTGGCGTTTCAGGCATCAGCAGCCGCGTCCACAGCATCGACGTCATTCTGGGCTTCAGTAAAGACCAGGATCCTCTGCTGGAGCCCATCGGGACGCATAAAGTGGACGAAGACCAGCTGGAAGAACAGGAGAAACAAGTGAATTCTGATCCATACAGTCACCTGCAGATCCCAGACCAGACCCAGCAGCAGCAATCGGTGTACCATGACACCGGACTTTTCTCCACGGACAAATGCGATGCAGATTTGGGAGACCCGCGGAGCAACGTGGAGAGCGACAGCCGTTCCCCTGACATCCCAGATGAGGATCAGCCGAAAAAAAAGCACAGACGCAACAGAACCACCTTCACCACCTATCAGCTACACGAGCTGGAGCGCGCCTTCGAGAAATCCCACTACCCGGACGTGTACAGTCGAGAAGAGCTGGCCATGAAAGTCAACCTGCCTGAAGTTCGAGTTCAGGTGTGGTTTCAGAATCGGCGCGCAAAATGGCGAAGGCAAGAAAAAATGGACACGGGCACCATGAAGCTCCACGACTCACCCATACGGTCCTTCAACCGACCACCAATGGCACCAAATGTGGGTCCTATGTCTAACTCTCTCCCGCTGGACCCCTGGCTGTCCTCGCCACTGTCCAGTGCCACACCAATGCACAGCATCCCGGGGTTTATGGGTCCTGGACAGAGCCTCCAGCCCACCTATACTGCTCACCCTGGCTTTCTCAACACGTCTCCAGGCATGATGCAGAATATGCAGCCAATGCCACCACCGCCCTACCAATGCCAACCAGTGTTTAATGACAAATACCCGCTGGAAGACGTCGACCGCAGTTCTAGTATCGCAGCTTTGAGGATGAAGGCCAAGGAGCACATTCAGTCGATGGATAAAACCTGGCAACCCATGTAAAAATGGAGAACGTTATTCAATGTTTTATTGGGATCTCATAGCAATGAGGGGATAgacattactgtaaaaaatgcttggttGTTTTAGGGACTTTAAGGATGAAGGCCAAGGAGTGCATTCAGTCCATGGATAAAACCTGGCTACCCATGTAAAA

Function

symbol description
rx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within camera-type eye photoreceptor cell differentiation. Predicted to be located in nucleus. Is expressed in eye; immature eye; optic primordium; and presumptive diencephalon. Human ortholog(s) of this gene implicated in isolated microphthalmia 3. Orthologous to human RAX (retina and anterior neural fold homeobox).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-237 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within camera-type eye photoreceptor cell differentiation. Predicted to be located in nucleus. Is expressed in eye; immature eye; optic primordium; and presumptive diencephalon. Human ortholog(s) of this gene implicated in isolated microphthalmia 3. Orthologous to human RAX (retina and anterior neural fold homeobox).

Ensembl:

ensembl_id ENSDARG00000040321

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033113 False 1138 mRNA 0.52 3 55833425 55853943
TCONS_00033114 True 1489 mRNA 0.50 4 55833425 55861351

Neighbor

gene id symbol gene type direction distance location
XLOC_016958 calr3b coding downstream 36107 55783896 ~ 55797318 (-)
XLOC_016957 EPS15L1 coding downstream 53498 55751966 ~ 55779927 (-)
XLOC_016956 NA coding downstream 81727 55684668 ~ 55751698 (-)
XLOC_016955 NA coding downstream 169450 55639371 ~ 55663975 (-)
XLOC_016954 tpm4b coding downstream 495840 55300425 ~ 55337585 (-)
XLOC_016960 cplx4c coding upstream 29322 55890673 ~ 56003820 (-)
XLOC_016961 CU013534.2 coding upstream 118876 55980227 ~ 56002115 (-)
XLOC_016962 CU013534.1 coding upstream 181161 56042512 ~ 56042630 (-)
XLOC_016963 NA coding upstream 199049 56060400 ~ 56095275 (-)
XLOC_016964 jund coding upstream 263823 56125174 ~ 56131312 (-)
XLOC_016952 NA non-coding downstream 608850 55215186 ~ 55224575 (-)
XLOC_016951 NA non-coding downstream 761881 55059826 ~ 55071544 (-)
XLOC_016950 NA non-coding downstream 848772 54983323 ~ 54984653 (-)
XLOC_016969 NA non-coding upstream 780787 56642138 ~ 56655769 (-)
XLOC_016971 NA non-coding upstream 947941 56809292 ~ 56884888 (-)
XLOC_016972 NA non-coding upstream 1191668 57053019 ~ 57061935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00216589_00224690 RX2 coding CI01000075 null 216129 ~ 224858 (+)
bowfin (Amia calva) AMCG00005979 rax2,LOC106613680,LOC108430232,LOC106573820 coding CM030142.1 CM030142.1 13901234 ~ 13906702 (+)