XLOC_016965 (uba52)


Basic Information

Item Value
gene id XLOC_016965
gene name uba52
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56339058 ~ 56348727 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033124
TTTTTCCGCCCGGACCAGCAGCTACTGCGAGGTGGCAAAATGCAGATCTTCGTGAAAACGTTGACCGGTAAAACCATCACCCTCGAGGTGGAGCCCAGCGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCCCGCCTGATCAGCAGCGTCTGATCTTCGCTGGTAAACAGTTGGAGGATGGACGCACACTGTCAGACTACAACATCCAGAAAGAGTCCACTCTTCACCTGGTGCTGCGTCTGAGAGGAGGAATCATCGAGCCTTCTCTCCGTCAGTTAGCTCAGAAATACAACTGTGAGAAGATGATCTGCCGCAAgtgttaTGCTCGTCTGCATCCTCGTGCCGTCAACTGCCGCAAGAAGAAGTGCGGACACACCAACAACCTGCGGCCCAAGAAGAAGCTGAAGTAGACGCTCGGCCGACTCTGCATCTGAAACACTTTACTGTTGTTCTAATAAAATCTGGATCAAACCATCTGAA

Function

symbol description
uba52 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBA52 (ubiquitin A-52 residue ribosomal protein fusion product 1).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0031386 protein tag molecular_function

KEGG:

id description
ko03010 Ribosome
ko04120 Ubiquitin mediated proteolysis
ko04137 Mitophagy - animal
ko05171 Coronavirus disease - COVID-19
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05131 Shigellosis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03011 Ribosome
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-051023-7 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBA52 (ubiquitin A-52 residue ribosomal protein fusion product 1).

Ensembl:

ensembl_id ENSDARG00000041435

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033124 True 496 mRNA 0.51 5 56339058 56348727

Neighbor

gene id symbol gene type direction distance location
XLOC_016964 jund coding downstream 207746 56125174 ~ 56131312 (-)
XLOC_016963 NA coding downstream 243783 56060400 ~ 56095275 (-)
XLOC_016962 CU013534.1 coding downstream 296428 56042512 ~ 56042630 (-)
XLOC_016960 cplx4c coding downstream 335238 55890673 ~ 56003820 (-)
XLOC_016961 CU013534.2 coding downstream 336943 55980227 ~ 56002115 (-)
XLOC_016966 cers4b coding upstream 7925 56356652 ~ 56387041 (-)
XLOC_016967 ctxn1 coding upstream 82120 56430847 ~ 56431298 (-)
XLOC_016968 pip5k1cb coding upstream 159724 56508451 ~ 56635782 (-)
XLOC_016969 NA coding upstream 293411 56642138 ~ 56655769 (-)
XLOC_016970 arhgap45a coding upstream 330487 56679214 ~ 56757069 (-)
XLOC_016956 NA non-coding downstream 587360 55684668 ~ 55751698 (-)
XLOC_016955 NA non-coding downstream 675083 55639371 ~ 55663975 (-)
XLOC_016952 NA non-coding downstream 1114483 55215186 ~ 55224575 (-)
XLOC_016971 NA non-coding upstream 460565 56809292 ~ 56884888 (-)
XLOC_016972 NA non-coding upstream 704292 57053019 ~ 57061935 (-)
XLOC_016974 dre-mir-7148 non-coding upstream 754674 57103401 ~ 57103485 (-)
XLOC_016976 NA non-coding upstream 854284 57203011 ~ 57204446 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00015676_00016381 UBA52, GM7808, UBA52.L coding CI01000075 null 15676 ~ 16429 (+)