XLOC_017057 (senp6a)


Basic Information

Item Value
gene id XLOC_017057
gene name senp6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 700616 ~ 712570 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034062
TGGCCGACTTCCCTTCCAAGATCAGCTTCGATGAGGCCAATGTTAGACTGGTTAACTACAACAAAGCCTCATTAGAGAAAGAAAAGGTTAAGGTGGAGAAAGCTGAAGTGGTAGCAGCGCCTTCATCTTCAGCGTTATTGGCCACGCCGTCTCTTTCAGTAGTGACAGTAGCTGTGGCCCCTGTGAATACAGCACCAGCAGTCCCCGTGCCGTGTGCAGCGCCCAGTGTGCAGACGCGCTTGTCTGCTCGGCTCCAGGAGTTCTGTGATGACGATGACGAGATGGCGGAGCTGCAGCCCACCTTCACCGGACCCATCATCAAGTTATTGGTTTACCCGCCACCGCCTGCTAAAGGAGGAATCTCCGTGACCAATGAGGACCTGCACTGCCTGAGTGACGGAGAGTTCCTCAACGACGTCATCATTGACTTCTATCTCAAATATCTGTTTTTGGAGAAGCTGAAGAAGGAAGATGCCGCCCGCAGTCACGTCTTCAGCTCCTTCTTCTACAAGAGGCTCAATCAGAGGGAGCGGAGAAACACCGTAGACACCTCCAGCCTGCCCATCCAGAAGAGGAAACACAACAGAGTGAAGACATGGACGCGCCACGTGGATCTCTTCCAGAAGGACTTCATCTTTGTGCCCATCAATGAGTCaGCACACTGGTATCTGGCCGTAATCTGTTTTCCGGGTCTAGAGAGTGCTCAGGTTGAGCCGAACCCGCTGTATCAGCCTCAGACTGCGGTGTCCTCCAGTCCACCAACAGACGGAGCTTCAGAACAGCGGGACCAGTTGAGCCAGAACACAGCCGGCCCGCACAGAGCTGACGCAAACCAAGTACAGTTTACCGACGGTTTGCGCAGAATAATCGAGTACAGCACAGAAGACGATTCCCATCAGTCTGATGACCAAAGCTCATGTCAGGATGAGTGCAGTGAGGACGGGGCATTGGCGGATGATTCTGGCAGCTTCGACAGAGCAGAGTGGACCTCCAAACCCACCATCTGCAAACAGCCTTGTATTCTGATCATGGATTCTCTGCGTGGACCAACCAGGTCAACCGTGGTGAAAACCTTACGAGAGTATCTAGAGGTGGAGTGGGAGGTAAAGAAAGGCTCTAAGAGGAGTTTCGGGAAAGAGCTGATGAAGGGTTCGAGTCCTCGTGTGCCGCAGCAGGACAACTTCAGTGACTGTGGAGTCTATGTGCTGCAGTACGTGGAGAGCTTCTTCGAGAGTCCCCTTCCAAGCTTTCACCTCCCGATGAATTTACTGGAGTGGTTTCCCCAACAGCGGATGAAGACCAAGCGGGAGGAGATCAAGGATCTGATCCTGAAGCTTCAGACTCAGCAGCAGCTCAGCCTGGAGAGCTCTGATCAGACGGACGGCGCTCACAGCCCTTACGAGGACTCTCTGGAGTCAGCAGACCTCATCCCATCAGTCAGCTCCTGAGCTCCGTCACATGACCAACAAACACTGACAGCCAATCCGGGCCTTGTGTGATCGCGCGCTGCTGGACGACCCTGCCGTTATTTCCGACGATCTCCTTTTAGTTTTGATGATGCGAACTTGAAAAGAAcaactttgtgtttgtttgtctgatttcatttgtatctaataaattgtaCATAAGCT
>TCONS_00034063
GTATCTAGAGGTGGAGTGGGAGGTAAAGAAAGGCTCTAAGAGGAGTTTCGGGAAAGAGCTGATGAAGGGTTCGAGTCCTCGTGTGCCGCAGCAGGACAACTTCAGTGACTGTGGAGTCTATGTGCTGCAGTACGTGGAGAGCTTCTTCGAGAGTCCCCTTCCAAGCTTTCACCTCCCGATGAATTTACTGGAGTGGTTTCCCCAACAGCGGATGAAGACCAAGCGGGAGGAGATCAAGGATCTGATCCTGAAGCTTCAGACTCAGCAGCAGCTCAGCCTGGAGAGCTCTGATCAGACGGACGGCGCTCACAGCCCTTACGAGGACTCTCTGGAGTCAGCAGACCTCATCCCATCAGTCAGCTCCTGAGCTCCGTCACATGACCAACAAACACTGACAGCCAATCCGGGCCTTGTGTGATCGCGCGCTGCTGGACGACCCTGCCGTTATTTCCGACGATCTCCTTTTAGTTTTGATGATGCGAACTTGAAAAGAAcaactttgtgtttgtttgtctgatttcatttgtatctaataaattgtaCATAAGCTAGGCGTTTCTCTGACTTTGACACGTCTGCTGCCTTTTGAGTTTAACGTCTCAGACATCCTTCAGTTTTGCTGCATCTGTGAAATAATAAAACGTCACGTGTTCATCATGTCGGACGGCTCGCTCTAATGTGCCTATAGGGTTATCAGCACAGTACTGTTGAGTGTTGCGTTTGGACTGACGGAAAACCGGTGCGCTTTTTTTTGTAAAGTCGCTCTCCGAGCAAACTTTGTGTGATTAAATCGATTCGTTTTTCAATGTTCTGCTATCTGCAACAGTGCACATCTGCCATGGTGGACAGTCAAATACAAGAAAATCACGTGTCAACAAA

Function

symbol description
senp6a Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation; regulation of kinetochore assembly; and regulation of spindle assembly. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism. Orthologous to human SENP6 (SUMO specific peptidase 6).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0090169 regulation of spindle assembly biological_process
GO:0016926 protein desumoylation biological_process
GO:0090234 regulation of kinetochore assembly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0070139 SUMO-specific endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-25 Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation; regulation of kinetochore assembly; and regulation of spindle assembly. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism. Orthologous to human SENP6 (SUMO specific peptidase 6).

Ensembl:

ensembl_id ENSDARG00000102923

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034062 False 1631 mRNA 0.52 11 700616 712241
TCONS_00034063 True 879 mRNA 0.48 2 710052 712570

Neighbor

gene id symbol gene type direction distance location
XLOC_017056 NA coding upstream 18324 681847 ~ 682292 (+)
XLOC_017055 nrl coding upstream 27037 661037 ~ 673579 (+)
XLOC_017054 smyd2b coding upstream 95104 572037 ~ 605512 (+)
XLOC_017053 si:dkey-121j17.6 coding upstream 134039 560805 ~ 566577 (+)
XLOC_017052 dse coding upstream 142892 535458 ~ 557724 (+)
XLOC_017058 myo6a coding downstream 3169 715739 ~ 777219 (+)
XLOC_017059 mei4 coding downstream 99442 812012 ~ 823276 (+)
XLOC_017060 nt5e coding downstream 113889 826459 ~ 848068 (+)
XLOC_017061 NA coding downstream 184335 896905 ~ 900380 (+)
XLOC_017062 BX537249.1 coding downstream 376088 1088658 ~ 1089603 (+)
XLOC_017065 NA non-coding downstream 487722 1200292 ~ 1203874 (+)
XLOC_017070 NA non-coding downstream 642093 1354663 ~ 1355683 (+)
XLOC_017074 NA non-coding downstream 951189 1663759 ~ 1725048 (+)
XLOC_017082 NA non-coding downstream 1501119 2213689 ~ 2214421 (+)

Expression


Co-expression Network