XLOC_017061


Basic Information

Item Value
gene id XLOC_017061
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 896905 ~ 900380 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036534
agagagagaatcttCAAACGGTCTGAACCGTAATACATAATTGTGCAAGCAGCTTTATTTTAAGACATCACTTTTGAGACAGACTACTTTGGGACAAAAGCCACTGTTACGTTTCAGGATGTTTTTAAGCATCGTTATTTAAGTAGAGACATTTCTCAGGTATAAAGTTACTTCAGATGTACCTGTACTTCTGGACAGagcgaacaaacaaaaaaaaagcaccaCCACACCATTTCACGGTTCAAGGAATATTACTGAACGATCATCATATTTACATTTCAACAGTTTGTTGATGAAGTACGGGAGTAAATACGGTTGTTTATGAACACACGGCGGGTAAATGTTCAACGGCTAATGTTTTTTCTCTGGGCTTTGTGCATGTTGTAAAATAAGTTTCTACTTTACATTTCAGAGAAGCACATCAGCATTTAACACAGTTATTCCTGTCACTGTATCTGTGGTCATAATAAACCACAATTACCATCtggcattttaaaaaaacaactgaTAATAGCATTTATCATCTGATCCGCGCCACATTTACACGAAAGCAGCATGTAGATAATGGACCAGAAACATCTTAACAAAGATTCAATAGGCTTGTGAACCAAGCAAAATAAAAGTCCTCGTTGTTTTTGTGCTTTCCTTCATGTCCTCGCTCTCGTCTCATAACACTTTCATATTAGCAAAACAACACATATCACAAAAACACACCTTTCCTCATTCGTCACGATGATGCTGGATACACAAATCACCACAGAGCTTTATTTACACACTTTACACACCGCAAAAGAGTTTTTGCCTagtttttagtctaaatattctacattttcttaaatcaagactaAGTAAAAagtattgtcttgttttctgaaataataaatCCAAATCACGTGAgtattttccttaaaacaagctaattaaTCTCGTATTCGCTttgaaatataattatttagcttgagtgtccctgctgaaaaatccagcttaaaccagcctagatttttcagcagggtttaagGAGAAATTTGCTTcgtttttacttattatttgtgAAAACAAGACAACACTTTTTGCTTGTCTCTTGATTTAGGAGTTTTAAACATTTCAGCTtgtaaaaaacaagacaaaaactctagaaACGCTTTATTTGCAgtctatatatataatttttaattcatACTTACacagttttaatattaaaaagatcATTAGCCCCTTATTCCCATGTGAGAAGATATAATCGTTGTTCGAAAACCAAAAAttcaaagtataaaaatatagtaAACTTTCATAAATCACGCACAACGTCCACACACACTACAATTAAATATAAgggcaaacaacaacaacaacaacaacaacaacaacaacaaaaagcccTGACAAATTCAACACTCTGTGATTCTGCCAAGCAGGATGCAATCCTGAATTAACATCTACGCAAAGTGACCCCTGAACCTGGGTTTCTGCAGGTTCcatcaagttaaatttaagactgtttaagactttttagatttatacagggctaaatgctaaagaTGAAGCGTCAAGTGCGAATGATTACATTCGAATAGTCGCGTCTTCGCATTtacaacatgtaaatcactcgcgcttggcGATTCATCCACACCCGGTTTGAACGCAGcattatggtggagtcatgaataTCACggtaagaaaatattaaaataaataaataaacacaaataacggttccagaaagcaggtaagacaaaaacgaaagcccaaaaagtaaaataaacaagtaaatatcagggtgagaacgtggtaaaatttaaaatgtgttaaaaatcagGCGGCCAAGAGGGCTTTTTCTCTGGATAGCTTTTgtaaacactgtcggttgggtttagggaagggggtgagtgGGGTGGGgggtaagtcagtcagtcagtcagttgacagtggcctctggtggatgtaCATGAGAACAGAAGAGAAATTTGATAAATGAAAaaagtacacagcggcctctgatggattcacgaaaacaaacactgcagaaaAAACCCAGCTCCTGGGAtgcatttggcgctctccagaaatgtatacaggggtatgttttcaaaatgagcctgggttcaaACGAAGCTGTCTATGCAGCCcagtctaaaataataataatttaataataaaatatataggtTATGTTGGTGTcctctgcaataaataaatagagaacgTTTAAGCAAAtattactgtaaggaaagtaattaaaggctctttttaaataaaaagttaaaggttttttgagattgggattgttggtgattgtatgggtgttaatggtCAGATTGGGCAgatatacatgaacaaaggaaaaataagacctgCTGAAACAAGATTTAAGATTTCAGtagatttaggactttttaaggggcctaaaaatttagcttttgagatttaagacattttaggaccCTGCGGAGACCCTGCTAAACCTAACCATAGCATCTCCAAATTCAGAGGGCATTCAATGCAGCTCTTAATTagaagttttgtcttgtttctagtctaaataatcTACCAATTCTTAAATTaacaagcattttctagacaataatgtcaaaatcaagtgagttttaccctaaaacaagctaaaaaatcTGCCAATTTTCAGCCAAcaacttgttttttttagctttaatagttgaataacaatgaaaacataacaacaaaaacaacaacaaaaaaaatctgcaagcGTAATCCTTAAATCTGACTCTAATATtcttccaggatcaacatagatgctaATCCAGCATTAAGTCCTATTTGGTAAAATCACACTAACCGAGAAGCTCGGACGTTTGAGAAAAGAAACATTTGGCACTTAAGCGATGAAACGTCGTAGTGAGCACTTCATCAAACCAGTGGTAACTCAAGCAGCTTTGTGTTTTCAACTTGACACACACCCATGTAGAAATCTGatgtatggatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgccaattacatatttggatttcacaaatataaaataaatgtcatataTGCTTCATCTATACATATCATAtcattcatatacagttgaagccaaaaaTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036534 True 3133 lncRNA 0.34 2 896905 900380

Neighbor

gene id symbol gene type direction distance location
XLOC_017060 nt5e coding upstream 48837 826459 ~ 848068 (+)
XLOC_017059 mei4 coding upstream 73629 812012 ~ 823276 (+)
XLOC_017058 myo6a coding upstream 119686 715739 ~ 777219 (+)
XLOC_017057 senp6a coding upstream 184335 700616 ~ 712570 (+)
XLOC_017056 NA coding upstream 214613 681847 ~ 682292 (+)
XLOC_017062 BX537249.1 coding downstream 188278 1088658 ~ 1089603 (+)
XLOC_017063 pnrc1 coding downstream 221078 1121458 ~ 1125395 (+)
XLOC_017064 lyrm2 coding downstream 296006 1196386 ~ 1199009 (+)
XLOC_017065 NA coding downstream 299912 1200292 ~ 1203874 (+)
XLOC_017066 hsd3b2 coding downstream 372146 1272526 ~ 1276175 (+)
XLOC_017070 NA non-coding downstream 454283 1354663 ~ 1355683 (+)
XLOC_017074 NA non-coding downstream 763379 1663759 ~ 1725048 (+)
XLOC_017082 NA non-coding downstream 1313309 2213689 ~ 2214421 (+)
XLOC_017084 BX681416.1 non-coding downstream 1361553 2261933 ~ 2266612 (+)

Expression


Co-expression Network