XLOC_017070


Basic Information

Item Value
gene id XLOC_017070
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1354663 ~ 1355683 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036538
cacttcaggctcacattgattttgtctgggccgaataaagaccaccagtgccgcatacctgcctaaagtggcccacattcacaTGCTATCTGGGATAACAGCTACTGGGCAGTGAATACTGACTGTAATCAGCCCCCACCATTAACATTTACTGACCAGATCATCACACGCTCAATGTTTTTagtttaaagcaacatttttttaaactacacAAGTCTTTAACATTCCTAATTAGCTAAACGTTGGGACAAATATACTAAAGTTTAAAGTATGTTCGTAGAAATCTTTGGAAAGTTAAATGCATCTGGGCTTTCATAATAAAAGAGACTTCTTATacaaaccacacacaaacagtcCAAGCAGCGGCatagaagacacacacacacacacacacacacacacacacacacacacacacacacacacattcattctgtCTGATTCATGAGCtgaaaaaatgtccccacaaggtcaaaatgtactggtattgctatacttgtgaggACATTCGGTAGGAATATCAGGACCAcaactacatacacacacacacacacacattcattctgtCTGATTCACGAGCtgaaaaaatgtccccacaaggtcaaaatgtactggtattgctatacttgtgaggACATTCGGTAGGAATACCAGGaccacatctacacacacacacagagatatgaGTCCCTCTGTTTGATGGCTATGGCTGGAGTGTTTGGCTATGGGCTGTTTGCTGGTATGCTGACTTTCACACAGTCAGGTTCATGCAAGTCTTCTACTGTGTAGACGAACACAACGCTTCTTCCAGCTCTCCGTAAGTCCTCCAAACTCACTGGTTGACAGTCCATTCTGCAGGATGTTGAATACTTGAACGGGTTACACGTTACAGGTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036538 True 897 lncRNA 0.43 2 1354663 1355683

Neighbor

gene id symbol gene type direction distance location
XLOC_017069 tab2 coding upstream 4367 1329509 ~ 1350296 (+)
XLOC_017068 nup43 coding upstream 26804 1316495 ~ 1327859 (+)
XLOC_017067 lrp11 coding upstream 66864 1278184 ~ 1287799 (+)
XLOC_017066 hsd3b2 coding upstream 78488 1272526 ~ 1276175 (+)
XLOC_017065 NA coding upstream 150789 1200292 ~ 1203874 (+)
XLOC_017071 mmachc coding downstream 29991 1385674 ~ 1393020 (+)
XLOC_017072 C20H6orf58 coding downstream 42881 1398564 ~ 1406308 (+)
XLOC_017073 C20H6orf58 coding downstream 56510 1412193 ~ 1421005 (+)
XLOC_017074 NA coding downstream 308076 1663759 ~ 1725048 (+)
XLOC_017075 CABZ01065423.1 coding downstream 478579 1834262 ~ 1891596 (+)
XLOC_017061 NA non-coding upstream 454283 896905 ~ 900380 (+)
XLOC_017056 NA non-coding upstream 672371 681847 ~ 682292 (+)
XLOC_017082 NA non-coding downstream 858006 2213689 ~ 2214421 (+)
XLOC_017084 BX681416.1 non-coding downstream 906250 2261933 ~ 2266612 (+)
XLOC_017085 NA non-coding downstream 925941 2281624 ~ 2284813 (+)
XLOC_017087 NA non-coding downstream 1125227 2480910 ~ 2481815 (+)

Expression


Co-expression Network