XLOC_017063 (pnrc1)


Basic Information

Item Value
gene id XLOC_017063
gene name pnrc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1121458 ~ 1125395 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034073
AAAAAGACGGCTATGCTTAAACTCTGAAGCACTTTATAAATAGATATTCATGAGTATCAGCGAAGACACAGATCAAAACATTTGATTGTGAACGTTATCTCCATGTGGACCTAATCGATCGAGAATTTCAAAGATCAATATCGCCATCTATTTGAGTGCGTCTGGACGCGTTCGCGATACAAACACCAGACATCTATACAGCTTGCTTGATATCATGTTGGGCGATGCTTTTGGTCGTCGTGTCGAATCAAGCGTGGACAATAAAGCAGTGAAGATTAACAGATCAAAGCAAGTGCTCTTGAAGAAAAGAGGACGAAACGTTCACAGCAAAGCCAACAACACATCAGCAAACATCCACAGAGGCAGCGCTAATGAAGAGCTCAAACCTGCTCAGTCCAAACCAGCACCCAATAAACAGCAGCCGAAGTCCTGCACTGCAGAACGAGGAAGCCAGATCAGCAGAGCGTCTATCCTGAACTGCAGCCGCCTGGAGCAAACCACAGACAACCTAAACAGACGGACACATCAGAGCAAGCACCAAATAAACGCAAGACAGGACAAGCCCACCTCCACAGAGAAGAGCCCAGAAAACATCCTGAAGCAGGGGAACGCCTCCACATCCTCGGATGCAGAGAAGACGTACGCCGGTGCAAAATTCAGCGAGCCGCCATCCCCCAGCGTCCTGCCCAAACCGCCCAGACACTGGGTAGGAGACCACGCTcctcagcacacacacaaacactgcagcagAGAGCAGATGTCTGAACACCTCAAAACACTGCTGAAGGTCCAAACTGACTCACTTTGA

Function

symbol description
pnrc1 Predicted to be active in nucleus. Orthologous to human PNRC1 (proline rich nuclear receptor coactivator 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-189 Predicted to be active in nucleus. Orthologous to human PNRC1 (proline rich nuclear receptor coactivator 1).

Ensembl:

ensembl_id ENSDARG00000043904

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034073 True 808 mRNA 0.49 2 1121458 1125395

Neighbor

gene id symbol gene type direction distance location
XLOC_017062 BX537249.1 coding upstream 31855 1088658 ~ 1089603 (+)
XLOC_017061 NA coding upstream 221078 896905 ~ 900380 (+)
XLOC_017060 nt5e coding upstream 273390 826459 ~ 848068 (+)
XLOC_017059 mei4 coding upstream 298182 812012 ~ 823276 (+)
XLOC_017058 myo6a coding upstream 344239 715739 ~ 777219 (+)
XLOC_017064 lyrm2 coding downstream 70991 1196386 ~ 1199009 (+)
XLOC_017065 NA coding downstream 74897 1200292 ~ 1203874 (+)
XLOC_017066 hsd3b2 coding downstream 147131 1272526 ~ 1276175 (+)
XLOC_017067 lrp11 coding downstream 152789 1278184 ~ 1287799 (+)
XLOC_017068 nup43 coding downstream 191100 1316495 ~ 1327859 (+)
XLOC_017056 NA non-coding upstream 439166 681847 ~ 682292 (+)
XLOC_017070 NA non-coding downstream 229268 1354663 ~ 1355683 (+)
XLOC_017074 NA non-coding downstream 538364 1663759 ~ 1725048 (+)
XLOC_017082 NA non-coding downstream 1088294 2213689 ~ 2214421 (+)
XLOC_017084 BX681416.1 non-coding downstream 1136538 2261933 ~ 2266612 (+)

Expression


Co-expression Network