XLOC_017110 (im:7142702)


Basic Information

Item Value
gene id XLOC_017110
gene name im:7142702
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 4392687 ~ 4454794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034138
AGGCGTGGTAATGCTCATTTTCTATTGAAATTATTGACGGTTCTTAGAGGTCTTTGCATCCTCacatataaaaaagaaattattaaaattcCATAAGGATGCAAGTCGAATGTTAAAGTTTTCTGTATGTTGACGTATCATATCATACCATATTAAGTGATCAAAACACGAATTTGAACAAAAGCGCGCGAAAAAAGGAAAGCTTTCTGTAATAAGACGTAGCTTTTAGCTTAGTTGGTGGCTTTTCAACCAAAACTTAGAGACTGAGTCCTCAGTAAATTCCGAGGGACATTTTTAACAGTCCACTGACAGCATTGGTGGTGGGCACGGAGACCCCCTCAGTATCCAAATTGCCGCCACTAGTCGCCCCCAGCGCCACACGTCACATCACGTCCGTACTTGAACTTGAATCCCATTCCATTCTTCAGAGGCAACCCctactgccacacacacacacacacacacacacacactgagacagGCGCAGGGTCCTCCCTGAGAGCAGCGTGAACGCGAGACGTAATTGCTCGGGTCCTGATTGATCTGGAGAGGAGGTGTTGTCTTCAGAGGTTGAGCCATTCCGCGCTCTGATGCCAAGCGCACATGGAGGACTGTGCCAAAGACTTCTCTCACCTGGCGAGCCCGCCGTCCACGGATCTTGGATTGCCTTCATAACAGGACAACAACCCTATTTATGTCCAAAAGAGCGAATATCCGCGTTTAAAGACGGGGTTAAACAAGCTGCCGCGGGTCggagtgattttttttcttctctcgcGTCGCTGTCTCAGGTTAAGTTGGCACTCAGTTCAATCTTCACACCAGTCGAGCGCTATCAAGGCTGTTTCTAGAGACTGCGAGTGCTAGTTTGAAGCGCAGAGGGACTATAGTATAAGCGAACTTACACCGGACTGTGGAGGAAAAAAGTTTGGAGAGCTTCGGGAGCGCGCGCGCTGAGGGTCCGAGTGTCCGTGAGATGCTGCTGTAAATGCGGGGCGATGTCCCGACGGAAGCAAGGCAACCCACAGCATCTGTCCCTCACGCAGAGGGAGAACCTGCCGACTCCAGCAGATCATGACGCAGGGATGAACCAGTGTCCATCAGAGGGCTCCGTCTCCAGTCCTGCAGGGGGAGCCGGAGAGAGTGACCTGCTGACCTGCGGCCAATGCCAAACCAACTTCCCCCTGGGAGATATTCTAGTGTTTATCGAGCACAAGAGGAGACTGTGCCCTGGACCGAGCTCCTGTTTCGACAAACCCAGCGACTGCGGCGGCAGTGGCTCCCCGTCTCCCAGACCCCTGCGGCCGGACGTCTGCCGGAGGTCTGGACCGGTGGAAGTCGGGATCCAGGTCTCACCgagagaggaggaggagaaacgCCTGACGCCTGCCAGAGGAATCTGCCCCAAGCAGGAGGGAGTCCCAACAGGAAAAGATGAGCCCTCCAGTTACATCTGCACCACTTGTAAGCAACCCTTTACGAGTGCGTGGTTTCTGCTGCAGCATGCACAGAACACCCATGGGATACGCATCTACCTGGACACCCACCCTACTAGCTGCTCTCTTACCCCTCGCATGGCTCTTCCTCCACCACTGGGGGCTGATGCCTTGCCTCGTTCCCCACTTGCCAGCTTTCTGGGTGATGGCAGCAACCCTTTCCAGCTGTTGCGTATGGGTGCCCCACTGCTACGAGAACCGCCGCATGGCTACATCGAGACCCGCTTGCCATCTACGCCACCCTTTGTAAGCCCTCCCCCACCACGCCATCCCCTAGAACGCCTTGGCCCAGAGGAGATGGGTCTTCTGTCCCAACATCCAAGTGCTTTTGAGCGGGTGATGCGAATGACACCAATGGGCATCCATGAACCCTCCATGGGCTTCTCTCAGCGTCTTCGTGAGTTGGCGGGAAACAACAACAATGGTGGTCCAACTCCGCCTCTTTCACCTAACCGCGTACCTCCCATGCATCGACTTCTCAGCCCCACTCTCTTCCAGCATGGCTCCAAAGCTCTACCGTTCCTACCCACACCCTCACAGCCACCATCAATTCCGTCAAGGGGAAATTCTTCATCCCCGCTAAACCAGGTCGGCAAAGCCAAGTCCTGTGAATTCTGTGGCAAGACTTTCAAGTTCCAAAGCAACTTGATTGTGCATAGACGTAGCCACACTGGCGAAAGACCTTATAAGTGCCATCTCTGTGACCATGCATGTTCACAGGCAAGCAAGCTAAAGCGCCACATGAAGACGCACATGCACAAATCAGGCTCTATGGGGAGTTCACCTGAGCAGGGAGGGCAAGATTCCGCTGGAGAGGGGCTTAAGAGCTGTGAGGATAATGGCACAAGGGAGGGAATCGATAATGAGGAGGAAgaagatgatgaagaggaggaggaggaggaggaagaagaggaagagcAGCAAAATGGGAGCAGGCCTGATTCCAATCTAAGCATGGACTCGGAGTTGAGCAGAAACAGAGAGAATGGCCCAAGAACCACTCCAGAGGATAAGCCTCTGGCCACTGATAGAGTGACAGAAAGCCAATACAACAACCTCGACAATCACTTGAGACTGCCACCAGGCAGCAGACCATGTGAGGGGATGGACAGAGATTCACAAGCAAGGGAGATCGACAGGGACAGACAGCCCATGGTGAATGGCAGAGGCTGTGGCCCGGAGGATTCCATCTCTGCGATGTTCCATCGTAAGCCAATGCCCATTTCCAGCTCCAGCCTCTCTGGATCTTCCGCCAAGCGGATCAAGGTGGAGAAGGATGTCGAGCTGCCGCAGGTGCCCGTTATATCCCCTGAAAATGTGTATTCTCAGTTGCTTGCTGGCTATGCTGCATCTCGTCACTTCATAAGGGAGCCCTTCCTGGGCTTTAATGACTCTAGGCAATCGCCTTTTGGCACTCCTTCTGAGCACTCTTCATCTGAAACAGGAAGCCTGCGCTTCTCCACCCCTCCAGGGGAAATTCTTGAGGGTGGTGGTATGTCAGGGCGCAGTGACAGCAGTACACCTCACCTCCATTTGCGGGGTCCTGGGCCAGGAAGGCCACCTAGCTCCAAGGAGAGTCGACGGAGTGACACCTGTGAGTACTGTGGCAAGGTGTTCAAGAACTGCAGCAATCTGACCGTGCATCGGCGCAGCCACACAGGTGAGAGGCCTTACAAGTGTGACCTGTGCAGCTACGCTTGTGCCCAGAGCAGTAAGCTTACCCGGCACATGAAGACGCATGGGCAGTTTGGCAAAGAGGTGTATCGCTGTGACATTTGCCACATGCCCTTCAGCGTCTACAGCACCCTGGAAAAACACGTGAAGAAGTGGCACGGTGAGCATTTGCTGACCAGTGAGGTCAAACTTGAACAAGCTGACAGAGCTTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116556

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034138 True 3383 mRNA 0.53 3 4392687 4454794

Neighbor

gene id symbol gene type direction distance location
XLOC_017109 tiam2b coding upstream 47580 4334008 ~ 4345107 (+)
XLOC_017108 CABZ01067979.1 coding upstream 74214 4309521 ~ 4318473 (+)
XLOC_017107 CABZ01067980.1 coding upstream 84952 4304457 ~ 4307735 (+)
XLOC_017106 ipcef1 coding upstream 141925 4221978 ~ 4250762 (+)
XLOC_017105 gnpat coding upstream 206143 4157815 ~ 4186544 (+)
XLOC_017111 lgals8a coding downstream 338722 4793516 ~ 4814098 (+)
XLOC_017112 tmem242 coding downstream 430504 4885298 ~ 4896355 (+)
XLOC_017113 BX649499.2 coding downstream 596395 5051189 ~ 5057952 (+)
XLOC_017114 si:dkey-60a16.1 coding downstream 610474 5065268 ~ 5070324 (+)
XLOC_017115 ccnk coding downstream 619324 5074118 ~ 5094423 (+)
XLOC_017099 LO018608.1 non-coding upstream 976106 3403647 ~ 3416581 (+)
XLOC_017097 NA non-coding upstream 1077050 3312662 ~ 3315637 (+)
XLOC_017093 CABZ01027815.1 non-coding upstream 1484022 2908551 ~ 2908665 (+)
XLOC_017116 dre-mir-7146 non-coding downstream 620130 5074924 ~ 5075054 (+)
XLOC_017119 CU571247.1 non-coding downstream 969168 5423962 ~ 5424096 (+)
XLOC_017124 NA non-coding downstream 1758016 6212810 ~ 6214789 (+)
XLOC_017125 CABZ01086587.1 non-coding downstream 1880502 6335296 ~ 6335411 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07170752_07194524 NA coding CI01000051 null 7170752 ~ 7194524 (+)