Fish Transcriptome and Expression Database

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model fish

XLOC_017119 (CU571247.1)

Basic Information

Item	Value
gene id	XLOC_017119
gene name	CU571247.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	5423962 ~ 5424096 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034151
GCCAATAGAAATGCAATTTATTCAGTTGttgattaaaactttatttctggCACCAGTTCAACtaagctaagcagggttgagcctggtcagtacctggacgggtgaccacatggaaaaactaggttgctgttggac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000087078

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00034151	True	135	rRNA	0.43	1	5423962	5424096

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_017118	zgc:123299	coding	upstream	278629	5132138 ~ 5145333 (+)
XLOC_017117	cyp46a1.1	coding	upstream	303025	5106568 ~ 5120937 (+)
XLOC_017115	ccnk	coding	upstream	329539	5074118 ~ 5094423 (+)
XLOC_017116	dre-mir-7146	coding	upstream	348908	5074924 ~ 5075054 (+)
XLOC_017114	si:dkey-60a16.1	coding	upstream	353638	5065268 ~ 5070324 (+)
XLOC_017120	nrxn3b	coding	downstream	138946	5563042 ~ 5965307 (+)
XLOC_017121	cep128	coding	downstream	561233	5985329 ~ 6010136 (+)
XLOC_017122	tshr	coding	downstream	611331	6035427 ~ 6079923 (+)
XLOC_017123	ttr	coding	downstream	718337	6142433 ~ 6157942 (+)
XLOC_017124	NA	coding	downstream	788714	6212810 ~ 6214789 (+)
XLOC_017113	BX649499.2	non-coding	upstream	366010	5051189 ~ 5057952 (+)
XLOC_017108	CABZ01067979.1	non-coding	upstream	1105489	4309521 ~ 4318473 (+)
XLOC_017107	CABZ01067980.1	non-coding	upstream	1116227	4304457 ~ 4307735 (+)
XLOC_017099	LO018608.1	non-coding	upstream	2007381	3403647 ~ 3416581 (+)
XLOC_017125	CABZ01086587.1	non-coding	downstream	911200	6335296 ~ 6335411 (+)
XLOC_017131	CR788301.1	non-coding	downstream	1495652	6919748 ~ 6919864 (+)
XLOC_017136	NA	non-coding	downstream	1903395	7327491 ~ 7351711 (+)
XLOC_017137	FO834840.1	non-coding	downstream	1916982	7341078 ~ 7341194 (+)

Expression

Co-expression Network