XLOC_017136


Basic Information

Item Value
gene id XLOC_017136
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7327491 ~ 7351711 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034179
GTTCAGGTTTGCTATTCTGGATGTATGCTAATACTTCCTTAGCACCACCCGTTCATGATACATAAAAGGTAATTGTGAAAATTATACTTTCCCCACccctttctcctttttttttggtACTGTGTCTGTCTGTATTCTCGCtgtctctctcatacacacactcacacacatacatttagacgctctcacacacacacccatttgTGACGCTCGGTCCTCCTTTTTAACCCGCAAGGTGAGGGTGTGGGAGAAACAATGAATAAGGAGTTTGTCTAAAGCACTCGGGATCGATCTCATCCGTATTATCGCTCGTCAAGGAGGTCCAGAACGCACAGCTGTTTCAGCGGATTTATTTTCCGAGAGTTTCCCACCGGCGGCCGGTAACAGAAACAGAGCTCAGGTGATCAGGAAATATCGTGTTCATCCGGCCATGGCCCGGCGAATTTCACCTGTTGTCGCGTTCCTGCTTTGTTTTGGATTGTCGCATTTCTTTGAGGCTGAAGCCAGATTGCAGCACTCTGTGGCCCTCCACAGGCAGAAGAGAGAATGGATCGTCCCTCCACAGATCCTAGAGGAAAACGTAGATTACACCAAGAAAGACTTCATTGCAAAAATTCGCTCAGATAAGGAAGTTGCCCAAATGAAAAATCTGAGGTACTCACTGAGAGGCGTAGGTGCAGATCAGGAGCCGTTCAATTTGTTTGTGGTGAATCCTGAAACTGGATATGTAAGAATAACAGGGATCCTTGACAGAGAGTCCATCTCACAGTACAATCTTTCAGGCATCGCTTTGTTCACAGATGGCTCAATTGCAGAGAATGACATCGGGCTGAGAATTAAAGTGAAAGACCAGAATGACAATGCTCCTGTTTTTGGTGTGATGAATCCTGGGGCTGTGGATGAGCTCAGTGCTGTTGGCACAGAAGTGATGAGGTTGAATTGCTTTGATGCTGATGAGCCAGGAAACCCAAACTCTCAGATCAAGTATGAGATTGTTGACCAGCAGCCGGCAGGGCAGTCAATGTTCAGGGTGGAAAACAACGGGAGAGTGGTTGTTGCCAATCCTAACCTGGATAGAGAGACTGTTGATCAGTACGTCCTGCTTGTCAAAGCATCTGACCTGAATGGAGCCCCAGGTGGCAATGCCGCAACAGGGACGGTCACCATCAAGATCAATGATGTCAATGATAACGTGCCTACATTGGGAGGCCCATATGAGGCCAGTATTGAAGAGAATACAGAGAATGTCGAGGTGATGAGGCTCAAAGTTAGTGACCTAGATCTTAAGGGTACGGACAACTGGGAAGGTGATTGTTATATTGCGTCAGGCAATGAGGCTGGATACTTCAGCATTCACATGGACCCAAAGACTAATGAAGTGGTCCTGACGCTAGACAagGCGGTTGATTATGAAGATGTCAAAGATCTGAACCTTGGCATCGGTGTAGCCAACAAAGCCCCCTTTCACCCATCTGTGAGTGGAGGATCACAAGGAGCGACTATCAGCTTTGGGGGCAGTGGTGGTGGTGCAGGAAGTGGAGCTGCTGGTGGAGCTGGAGCCATGGGTGGCGCCAGTGGCAGCGGAGGTGGTACAGGTGCCAGTTCATGGTCATCGTCAGGCGTTCCGCTCTACAATGTAAACATAAAGGTGAAAAACCAGCCAGAAGGTCCCAAGTTCTTTCCAGGAACAAAAGCCATTCCCATCTCAGAAGGCAAGGCTTTTGACAGCACTGAGATCATTGCTCGATACCCCGCTATTGATACAGACACAGGAAAGGAAGCAACCAACGTCAAGTACATTAAATCGTCTGACCCTGATAACTGGCTGACCATCGACGAGAAGACTGGGGCCATTAGAATGAACAAGGCTCCTGACCGCGAGTCCAAGTATCTTGTTAATGGCACTTATTATGCCAAAGTCCTCAGCATAACCCAAGACTTGCCTTCGAAGACTGCAACAGGCACCATTGCCATTCAGGTGGAGGATTTTAATGACCACTGCCCCACTTTGATAAGCAATGTCCAGACACTTTGCACTGACAAGGATGCGGTCTTGGTTACTGCAAAAGATGAGGATGCACCACCCAATGGAGCTCCATTCGATTTCAATATTGTTTCAGAAGGGACTGCGGGGAAATGGACAGTTGAATATATGAATGACACCACAGCCATATTCAGGACCCATGAAAAGCTATGGCCAGGACCACATGAGCTGATGGTGGAAGTCACGGATCAGCAGGGATTGAAATGTCCAGAACCTCAGAAACTGCAGGTGGATGTGTGCACATGTAAAAACCAGGGTGGATGTGATCGAACCGCAACAGGAGATGCGAAGAAGGGGTCCAGGCTTGGACCTGCAGGAATCGGCCTGCTCCTCCTTGGACTTCTTGCATTATTGCTCATCCCACTTCTGTTGCTGCTCTGTACGTGTGGAATGACAGGAGCTTTCACAGACATGCCGTTTGAAACCAAAGTGCATCTCATCTCTTCCAATACTGAAGGCCAAGGAGAGGATAGGgATGTTCCATTAATGTGCCCTCCTTCCAATGTTGACGGGATGGGTTTCATGACAAAGGATTATATGGCTGTGGGTGCCATGCATTCTGCAGGACTAGGATTAGGAGTAGGAGCAGGAGTAGGAGCTGCGGGTTTCCTGGAGTCCACTTCCACAATGGGTGGCCGAGGCTACAATGAAATGGAATTAGACTACATGAACTCCATCGGGAGAAATAATGCCTATTCGAGTAGAGATATGGCTGGAGATTTTGACGGAATGGCATTATCTGATGGATACCTGTGTGAATACTATTCACAGAAAAGCCGTGTAGTGGACGGATTTGGAAAGGATGACCCTATGGTGTATGATTATGAAGGGAAGGGTTCTCCTGTTGGTTCAGTTGGCTGCTGCAGCTTACTCGAAGATCAAAATGACCTAGAGTTTCTGAATGACCTTGGGCCAAAGTTCACCACTCTCGCTGACATTTGTGGAGGTAAAAAGACTGAAATCCCAGCTCCTGCACCAGCTCCTCTTCCTCCCCCTCCCAAACCTGTAGTGGACCGCTCCGAGGTGGTGTCTTCAACCACCAACATCTTAAATACAGGGAATATTGCCACTAACAGAGTTAACACAGTAAACGTAGCTTCCAACATGGCCACAGCATCATCTACTCGTGTGGAGAACGTGCTGGTTACAGACAACCGCCCCACTATGATTACGAGTGTCCAGCCAGCTCCAACTCTTCTGGTGCAACCGCAGCCAATGTACTACATGGTCGAGCAGCAGCCAAGCACAGTACTGGTCGCAGAAAGACCTGCCATGACACAGGGCATGTATGTTTTGAACAGTGGCCCAGTTGCTGAGGGCATGGTAGTGCAGGGCGGCAATATAGCAGCAAATACCCTGACGAGAGGTGAGAGAATGGTGCTTGTGGACCGTGGCGGACCTGCTCAAGCGCTCAACAATGGGATGCTGCACACAAGTAATCTGTCTGGATCACAATTGCTCCTGGTGGATGGAGGTGCCACGAGCGGTCAAGTCCTTCAGGGGACTATTCAAAGAGGGGTTGCTGGATCTCAGGGCCTGATGTTTGTGGACGGACAAGGGGGGCAGGTGATTCAGGGATCAATCAACAATGGTATTTCCACTCATGGCGGATCTCAAAATGTCTTTTATGTGGAGAATAAAGGGGGATCGAGTGTTGTCCAGGGGGGGCTTCAAATGGGCAAGGCATCCACCGCAGGATCCCTTATTGGTGATGTTGGCATTGGTGGGTCATCTGTCAAGATTACCCAAAATCCTTCATCGCATAAAGTCGTTGTCCAGGAGAGGAAGGTTGTGACAACACAAAGCGTCAAGTAACAATGCAACACTCAGGCGGCACATGAACAGTTGTGAAAATGTCTAGGGTTTTAAAAATCAAGTCTTGCGCAGCTCCTGAATGCAAATCAGTAGAGTATCATGTTGTCAACATGTTGGGTCATAGAGTGTACGCAAATGAATTCTTGAAAAACTGGTTTTAATGCCCTTGAGTTTACTTCTCTGTATGCGTAGTGCACTGTTTgcgtatttttttattactttgtttttgttattttttttgcatgttttgctGGTTGTCTGTTGCTGTAtgaatgcattgagtgtgttttattctgtaaaggaGGGTTTATGATAAAATGCAGTTTAGGTAGCCCTGAGGCCATTCCAGTGTAGTATATGCAAATTTGTTTCGGCAGGAAACAGATACATGAGAATGTTTGTACACTGCCAGAATTAAGTTGCCTTAAGTGCAGTCACCTCAAAATAATGAAGAAAGGCGGACAGTTTTTGTCTCCAAAATACATGCTATAAAAGACAACTCATAAATCACTTTTCAGATTAAGCGAACTATAAAAGTATGTTTTGGGAAGTTGTGTTGTGCCTCATTGGCTACCACTGGTACGCTTTGTATTTTTCAGTATTGCTCATTTCCTTTTAGTCACCATTGAAATCATTAGAATTTCTTTTCAGATTTCTGTTTGTATGTGTAAATAGACCAAACCCACATTCTAAGCAATACTGCTTTAATGGATAAAATGAATGTtatctataattttttttgtaatttaaaatagaGTACTGGACTATTCGTTCAGCattagaaaagaaaaagaagaaaatactTCAGTTGTGGTGCTGGGATTTTTCTATTGACAGCTCTGgtttgttacaacaaaaaagCTTTTCGTTGGTTTTAAAAGGGGCAGGCATTGACATTGTTATCTACATGGTGGGAAAGCATGGTAAGGTGTACTGGTTTTCACAGCAACACTTTTTTCAGGAgtcaataaaatatattgtaaggCAGTGTAAGACTGTTTACGAACcttttttaaatgttgattttataGATGTTTCAGATGTTTGACTTTGGAAACCACCtgcaaaaactaataaaaagtcatttaatgACCTGTGGTCTAAAATGATCTGTCTGTGAGCAAATGTCAGGAACTTGTGGCTAAAACTGGAATTTGTAGAATGATTCAACTTAAGGATGCCAGTCATTTCTGTGGCAAATTACATAACTGCTCAGGTTCTGATTCAGATAGTGCAAGCAAACAGGAAAACCTACAGCCACTgagatattcaattcaatttatgtttatttatatggagcttttacaatgaagatttgagtcaaagcagcttaagaTAGCTGTTCTAgtaaattgatatatatatatgtatgt
>TCONS_00036368
CTCGCtgtctctctcatacacacactcacacacatacatttagacgctctcacacacacacccatttgTGACGCTCGGTCCTCCTTTTTAACCCGCAAGGTGAGGGTGTGGGAGAAACAATGAATAAGGAGTTTGTCTAAAGCACTCGGGATCGATCTCATCCGTATTATCGCTCGTCAAGGAGGTCCAGAACGCACAGCTGTTTCAGCGGATTTATTTTCCGAGAGTTTCCCACCGGCGGCCGGTAACAGAAACAGAGCTCAGGTGATCAGGAAATATCGTGTTCATCCGGCCATGGCCCGGCGAATTTCACCTGTTGTCGCGTTCCTGCTTTGTTTTGGATTGTCGCATTTCTTTGAGGCTGAAGCCAGATTGCAGCACTCTGTGGCCCTCCACAGGCAGAAGAGAGAATGGATCGTCCCTCCACAGATCCTAGAGGAAAACGTAGATTACACCAAGAAAGACTTCATTGCAAAAATTCGCTCAGATAAGGAAGTTGCCCAAATGAAAAATCTGAGGTACTCACTGAGAGGCGTAGGTGCAGATCAGGAGCCGTTCAATTTGTTTGTGGTGAATCCTGAAACTGGATATGTAAGAATAACAGGGATCCTTGACAGAGAGTCCATCTCACAGTACAATCTTTCAGGCATCGCTTTGTTCACAGATGGCTCAATTGCAGAGAATGACATCGGGCTGAGAATTAAAGTGAAAGACCAGAATGACAATGCTCCTGTTTTTGGTGTGATGAATCCTGGGGCTGTGGATGAGCTCAGTGCTGTTGGCACAGAAGTGATGAGGTTGAATTGCTTTGATGCTGATGAGCCAGGAAACCCAAACTCTCAGATCAAGTATGAGATTGTTGACCAGCAGCCGGCAGGGCAGTCAATGTTCAGGGTGGAAAACAACGGGAGAGTGGTTGTTGCCAATCCTAACCTGGATAGAGAGACTGTTGATCAGTACGTCCTGCTTGTCAAAGCATCTGACCTGAATGGAGCCCCAGGTGGCAATGCCGCAACAGGGACGGTCACCATCAAGATCAATGATGTCAATGATAACGTGCCTACATTGGGAGGCCCATATGAGGCCAGTATTGAAGAGAATACAGAGAATGTCGAGGTGATGAGGCTCAAAGTTAGTGACCTAGATCTTAAGGGTACGGACAACTGGGAAGGTGATTGTTATATTGCGTCAGGCAATGAGGCTGGATACTTCAGCATTCACATGGACCCAAAGACTAATGAAGTGGTCCTGACGCTAGACAagGCGGTTGATTATGAAGATGTCAAAGATCTGAACCTTGGCATCGGTGTAGCCAACAAAGCCCCCTTTCACCCATCTGTGAGTGGAGGATCACAAGGAGCGACTATCAGCTTTGGGGGCAGTGGTGGTGGTGCAGGAAGTGGAGCTGCTGGTGGAGCTGGAGCCATGGGTGGCGCCAGTGGCAGCGGAGGTGGTACAGGTGCCAGTTCATGGTCATCGTCAGGCGTTCCGCTCTACAATGTAAACATAAAGGTGAAAAACCAGCCAGAAGGTCCCAAGTTCTTTCCAGGAACAAAAGCCATTCCCATCTCAGAAGGCAAGGCTTTTGACAGCACTGAGATCATTGCTCGATACCCCGCTATTGATACAGACACAGGAAAGGAAGCAACCAACGTCAAGTACATTAAATCGTCTGACCCTGATAACTGGCTGACCATCGACGAGAAGACTGGGGCCATTAGAATGAACAAGGCTCCTGACCGCGAGTCCAAGTATCTTGTTAATGGCACTTATTATGCCAAAGTCCTCAGCATAACCCAAGGCAACAACTTGCCTTCGAAGACTGCAACAGGCACCATTGCCATTCAGGTGGAGGATTTTAATGACCACTGCCCCACTTTGATAAGCAATGTCCAGACACTTTGCACTGACAAGGATGCGGTCTTGGTTACTGCAAAAGATGAGGATGCACCACCCAATGGAGCTCCATTCGATTTCAATATTGTTTCAGAAGGGACTGCGGGGAAATGGACAGTTGAATATATGAATGACACCACAGCCATATTCAGGACCCATGAAAAGCTATGGCCAGGACCACATGAGCTGATGGTGGAAGTCACGGATCAGCAGGGATTGAAATGTCCAGAACCTCAGAAACTGCAGGTGGATGTGTGCACATGTAAAAACCAGGGTGGATGTGATCGAACCGCAACAGGAGATGCGAAGAAGGGGTCCAGGCTTGGACCTGCAGGAATCGGCCTGCTCCTCCTTGGACTTCTTGCATTATTGCTCATCCCACTTCTGTTGCTGCTCTGTACGTGTGGAATGACAGGAGCTTTCACAGACATGCCGTTTGAAACCAAAGTGCATCTCATCTCTTCCAATACTGAAGGCCAAGGAGAGGATAGGgATGTTCCATTAATGTGCCCTCCTTCCAATGTTGACGGGATGGGTTTCATGACAAAGGATTATATGGCTGTGGGTGCCATGCATTCTGCAGGACTAGGATTAGGAGTAGGAGCAGGAGTAGGAGCTGCGGGTTTCCTGGAGTCCACTTCCACAATGGGTGGCCGAGGCTACAATGAAATGGAATTAGACTACATGAACTCCATCGGGAGAAATAATGCCTATTCGAGTAGAGATATGGCTGGAGATTTTGACGGAATGGCATTATCTGATGGATACCTGTGTGAATACTATTCACAGAAAAGCCGTGTAGTGGACGGATTTGGAAAGGATGACCCTATGGTGTATGATTATGAAGGGAAGGGTTCTCCTGTTGGTTCAGTTGGCTGCTGCAGCTTACTCGAAGATCAAAATGACCTAGAGTTTCTGAATGACCTTGGGCCAAAGTTCACCACTCTCGCTGACATTTGTGGAGGTAAAAAGACTGAAATCCCAGCTCCTGCACCAGCTCCTCTTCCTCCCCCTCCCAAACCTGTAGTGGACCGCTCCGAGGTGGTGTCTTCAACCACCAACATCTTAAATACAGGGAATATTGCCACTAACAGAGTTAACACAGTAAACGTAGCTTCCAACATGGCCACAGCATCATCTACTCGTGTGGAGAACGTGCTGGTTACAGACAACCGCCCCACTATGATTACGAGTGTCCAGCCAGCTCCAACTCTTCTGGTGCAACCGCAGCCAATGTACTACATGGTCGAGCAGCAGCCAAGCACAGTACTGGTCGCAGAAAGACCTGCCATGACACAGGGCATGTATGTTTTGAACAGTGGCCCAGTTGCTGAGGGCATGGTAGTGCAGGGCGGCAATATAGCAGCAAATACCCTGACGAGAGGTGAGAGAATGGTGCTTGTGGACCGTGGCGGACCTGCTCAAGCGCTCAACAATGGGATGCTGCACACAAGTAATCTGTCTGGATCACAATTGCTCCTGGTGGATGGAGGTGCCACGAGCGGTCAAGTCCTTCAGGGGACTATTCAAAGAGGGGTTGCTGGATCTCAGGGCCTGATGTTTGTGGACGGACAAGGGGGGCAGGTGATTCAGGGATCAATCAACAATGGTATTTCCACTCATGGCGGATCTCAAAATGTCTTTTATGTGGAGAATAAAGGGGGATCGAGTGTTGTCCAGGGGGGGCTTCAAATGGGCAAGGCATCCACCGCAGGATCCCTTATTGGTGATGTTGGCATTGGTGGGTCATCTGTCAAGATTACCCAAAATCCTTCATCGCATAAAGTCGTTGTCCAGGAGAGGAAGGTTGTGACAACACAAAGCGTCAAGTAACAATGCAACACTCAGGCGGCACATGAACAGTTGTGAAAATGTCTAGGGTTTTAAAAATCAAGTCTTGCGCAGCTCCTGAATGCAAATCAGTAGAGTATCATGTTGTCAACATGTTGGGTCATAGAGTGTACGCAAATGAATTCTTGAAAAACTGGTTTTAATGCCCTTGAGTTTACTTCTCTGTATGCGTAGTGCACTGTTTgcgtatttttttattactttgtttttgttattttttttgcatgttttgctGGTTGTCTGTTGCTGTAtgaatgcattgagtgtgttttattctgtaaaggaGGGTTTATGATA
>TCONS_00034180
CCAGAACGCACAGCTGTTTCAGCGGATTTATTTTCCGAGAGTTTCCCACCGGCGGCCGGTAACAGAAACAGAGCTCAGGTGATCAGGAAATATCGTGTTCATCCGGCCATGGCCCGGCGAATTTCACCTGTTGTCGCGTTCCTGCTTTGTTTTGGATTGTCGCATTTCTTTGAGGCTGAAGCCAGATTGCAGCACTCTGTGGCCCTCCACAGGCAGAAGAGAGAATGGATCGTCCCTCCACAGATCCTAGAGGAAAACGTAGATTACACCAAGAAAGACTTCATTGCAAAA

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0034330 cell junction organization biological_process
GO:0034332 adherens junction organization biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-7531 Predicted to enable calcium ion binding activity. Acts upstream of or within convergent extension involved in gastrulation; desmosome assembly; and epiboly involved in gastrulation with mouth forming second. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in arrhythmogenic right ventricular dysplasia 10 and dilated cardiomyopathy 1BB. Orthologous to human DSG2 (desmoglein 2).

Ensembl:

ensembl_id ENSDARG00000076945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034179 False 5232 lncRNA 0.45 14 7327491 7351711
TCONS_00036368 False 4044 lncRNA 0.48 15 7327627 7350653
TCONS_00034180 True 291 processed_transcript 0.50 2 7327813 7331330

Neighbor

gene id symbol gene type direction distance location
XLOC_017135 bsnd coding upstream 75721 7243879 ~ 7251770 (+)
XLOC_017134 si:dkeyp-51f12.3 coding upstream 98224 7209972 ~ 7229267 (+)
XLOC_017133 si:dkeyp-51f12.2 coding upstream 135037 7180298 ~ 7192454 (+)
XLOC_017132 ftr85 coding upstream 222854 7084154 ~ 7104637 (+)
XLOC_017131 CR788301.1 coding upstream 407627 6919748 ~ 6919864 (+)
XLOC_017138 pcsk9 coding downstream 46379 7398090 ~ 7432867 (+)
XLOC_017139 NA coding downstream 182005 7533716 ~ 7540142 (+)
XLOC_017140 bloc1s2 coding downstream 232500 7584211 ~ 7593106 (+)
XLOC_017141 si:dkey-19f4.2 coding downstream 447904 7799615 ~ 7801342 (+)
XLOC_017142 NA coding downstream 550245 7901956 ~ 7902288 (+)
XLOC_017125 CABZ01086587.1 non-coding upstream 992080 6335296 ~ 6335411 (+)
XLOC_017124 NA non-coding upstream 1112702 6212810 ~ 6214789 (+)
XLOC_017119 CU571247.1 non-coding upstream 1903395 5423962 ~ 5424096 (+)
XLOC_017116 dre-mir-7146 non-coding upstream 2252437 5074924 ~ 5075054 (+)
XLOC_017144 NA non-coding downstream 719613 8071324 ~ 8077719 (+)
XLOC_017145 CR388209.3 non-coding downstream 1582697 8934408 ~ 8934523 (+)
XLOC_017146 CR853291.1 non-coding downstream 1642149 8993860 ~ 8995981 (+)

Expression


Co-expression Network