XLOC_017135 (bsnd)


Basic Information

Item Value
gene id XLOC_017135
gene name bsnd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 7243879 ~ 7251770 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034178
GGACTTCTAGGTTTCCTCAATGGCAGAGAACAAGCCGTATCGCTATGGGCTCATTGTTTTGGGAATGGCGTTCGTGGCGTTGGGTATGTTCATGATTTCTGTGGAGGAGCCTCATGTGTTCGTCACGTTCTGCGCTATGGGCGTGATAATGATGGGCATAGGGACTGTATGGACTGTGTGCCAGTGTTATCCCAGGGTGACTGTTATACTGCAGGAGAAAGAAGAGCTCTGTGGGGCTGAAAAACAGGACCTGATTGAAGGAAGATCAGATGAAAAAAGTTCTGCCAAACCAGTAAAAGCTCCTTTGGCTGGCTTCTGTGATGATGATGAAGCAGAAATTTCTGCAGACCCAAAGCTCCACACTGAGAGCAAACGCAGTGAGCACGTCATCGTCCTCCAAACGTGTCGAAGCTCTCCTAGTGTTCTGACCTGCTCCAGCTCTCCACAGACGGACAGAAAATCCTCCAGACCGGACCCCAACAGAGAGATGTACTATGGTAGAGTCAAGGACTCATGTAATGTCACATCTGAGCTGGAGAGTGAATAGTTTCTGTTTATCGAATAGTTTAACATGTTAGCTTCTGTTTGTCCCTAACCCTACACTGTTAATGATTTTCTGGAGAATCTACAGTACCTTACTGTAAATCATTTACATCGAtaatgctgtatttacatttacagcaccatttctCTTGCTGTTTATCTTTTTACAGTATTGTGCCTTTACTGTAAAACATACCTTAATATTAACATTCACCTACAGTAACATTGCTTAACTGTtctacagtaaaattcagttcatattacagcaAATGCTGTGTAATTGacaaaaattgttaacagtgtaaccCTAACATTTGAcgtctgaaataaaacaagatttGCC

Function

symbol description
bsnd Enables chloride transmembrane transporter activity. Predicted to be involved in chloride transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in pronephric duct. Human ortholog(s) of this gene implicated in Bartter disease; Bartter disease type 4a; and sensorineural hearing loss. Orthologous to human BSND (barttin CLCNK type accessory subunit beta).

GO:

id name namespace
GO:0006821 chloride transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017081 chloride channel regulator activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070705-548 Enables chloride transmembrane transporter activity. Predicted to be involved in chloride transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in pronephric duct. Human ortholog(s) of this gene implicated in Bartter disease; Bartter disease type 4a; and sensorineural hearing loss. Orthologous to human BSND (barttin CLCNK type accessory subunit beta).

Ensembl:

ensembl_id ENSDARG00000086265

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034178 True 886 mRNA 0.42 3 7243879 7251770

Neighbor

gene id symbol gene type direction distance location
XLOC_017134 si:dkeyp-51f12.3 coding upstream 14612 7209972 ~ 7229267 (+)
XLOC_017133 si:dkeyp-51f12.2 coding upstream 51425 7180298 ~ 7192454 (+)
XLOC_017132 ftr85 coding upstream 139242 7084154 ~ 7104637 (+)
XLOC_017131 CR788301.1 coding upstream 324015 6919748 ~ 6919864 (+)
XLOC_017130 igfbp3 coding upstream 439642 6756247 ~ 6804237 (+)
XLOC_017136 NA coding downstream 75721 7327491 ~ 7351711 (+)
XLOC_017137 FO834840.1 coding downstream 89308 7341078 ~ 7341194 (+)
XLOC_017138 pcsk9 coding downstream 146320 7398090 ~ 7432867 (+)
XLOC_017139 NA coding downstream 281946 7533716 ~ 7540142 (+)
XLOC_017140 bloc1s2 coding downstream 332441 7584211 ~ 7593106 (+)
XLOC_017125 CABZ01086587.1 non-coding upstream 908468 6335296 ~ 6335411 (+)
XLOC_017124 NA non-coding upstream 1029090 6212810 ~ 6214789 (+)
XLOC_017119 CU571247.1 non-coding upstream 1819783 5423962 ~ 5424096 (+)
XLOC_017116 dre-mir-7146 non-coding upstream 2168825 5074924 ~ 5075054 (+)
XLOC_017142 NA non-coding downstream 650186 7901956 ~ 7902288 (+)
XLOC_017144 NA non-coding downstream 819554 8071324 ~ 8077719 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_01965924_01969562 NA coding CI01000051 null 1965703 ~ 1969602 (+)