XLOC_017111 (lgals8a)


Basic Information

Item Value
gene id XLOC_017111
gene name lgals8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 4793516 ~ 4814098 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034139
CTAGGCTTTCATAACATCGCAATTCATTGATCGCTGAACGCGTCGCGGTTTAATCTCTCAATGATTGGCTCCTAAACGCGTCGCGCTCATAATGCTCATCATTGATTGGCTTTTAAACGCGTCGAACTCGCATCTCTCATTATTGATTGGCCACCAAACGCGTCGTTCTCATTCTAGGAAGTGAAAGCGCAGAAAGCGTTTCTATTTTCTTCCTCAGCTAGTGATTAACTCGTAATAACAGCGTATAATAGACTTTCTGAACGGCGTTGCAAAGATGTCGGTCGCAAATCCGAAACAGACCATAACGAATCCAACGATTCCTTATATTGGTACCATCCTGGGAGGACTTCAACCCGGCGAGATGGTGCTCATTCAGGGCACTGTGCCCAGTGGTTCTGACAGATTTCAAGTTGACCTGACCTGTGGGAGCAGCATGAAGCCTCGGGCAGATGTGGCCTTTCATTTTAATCCTCGCTTCACGCGATCTCCCTACATCGTCTGTAATACACTGCAGAAGGAGCGCTGGGGAAAAGAGGAGATCCACTACCTGATGCCTTTCAGTCACGGCGCTGCCTTTGAAATCATCATACTTGTACAGAAAGACTTGTTCAAGGTGGCGGTAAACGGCTCTCACCTGCTGGAGTACCGGCAGAGGGTAGAGCTAAAGAAGGTGGACACACTGAATATATCCGGGAAGGTTCAAATTCAGGCCATTGGGTTTATTCCCAGTTCAGAAAGCAAGagcCCTGTCATGCCTTCAAATGCAGTTGCAAGCAAAAGACCACAGCCTTATagcCTTCCATTTAGGAGCAAACTCGCGAAAGGTTTAAGTCCAGGAGATTCCATTATGGTGAAGGGTCAGATCCCTGGTTCCCCACACAGCTTCGCAGTAAACCTGCGCATCAGTAACTCGGAGGACATCGCTTGTCATTTAAACCCTCGTTTCAAAACTGGATCTTTTGTTCGAAACTCGTTCCTTCGAGGCTGTTGGGGATCTGAGGAGGTTTCGCTGCCCAGGTTTCCCTTCTCCCCTGGTGAATACTTCGAGATGATCATCTTGTGCGAAGCTCAGGAGTTTAAAGTGGCAGTAAACGGCTTCCACCAACTGAGCTACAAGCACCGCGTGCAGGATCTGAGCAGTGTGGATGTGCTGGAGATCATGGGAGATCTAGAGCTCAGGGATGTGAAGATGTGGTGAGAAGAAGCTCCAGCCTGAAGAacaatcctgttttttttttttctccaagcaAAGTATATTTAATCAACCTGTGTCCTCCTGTTAATTCTATATTGGTACGAATGTCGCCATGGTAAAATATGGTGAGCAGCTCCAGCCTAAGGAAAGCATTCCTACTATATTTAACATCTCACTCCTACAACTCAAGCTATATAAACGTATTCAATCCAGCTAATTTGttcaaatgatttacatttttttggaggccataactatgtttccatccatctatatttGTTCATTTTGGAAATGCACGTA
>TCONS_00034140
ATGTCGGTCGCAAATCCGAAACAGACCATAACGAATCCAACGATTCCTTATATTGGTACCATCCTGGGAGGACTTCAACCCGGCGAGATGGTGCTCATTCAGGGCACTGTGCCCAGTGGTTCTGACAGATTTCAAGTTGACCTGACCTGTGGGAGCAGCATGAAGCCTCGGGCAGATGTGGCCTTTCATTTTAATCCTCGCTTCACGCGATCTCCCTACATCGTCTGTAATACACTGCAGAAGGAGCGCTGGGGAAAAGAGGAGATCCACTACCTGATGCCTTTCAGTCACGGCGCTGCCTTTGAAATCATCATACTTGTACAGAAAGACTTGTTCAAGGTGGCGGTAAACGGCTCTCACCTGCTGGAGTACCGGCAGAGGGTAGAGCTAAAGAAGGTGGACACACTGAATATATCCGGGAAGGTTCAAATTCAGGCCATTGGGTTTATTCCCAGTTCAGAAAGCAAGagcCCTGTCATGCCTTCAAATGCAGTTGCAAGCAAAAGACCACAGCCTTATTCAGTCATGTCGGAGTCAGGTGACACGagcCTTCCATTTAGGAGCAAACTCGCGAAAGGTTTAAGTCCAGGAGATTCCATTATGGTGAAGGGTCAGATCCCTGGTTCCCCACACAGCTTCGCAGTAAACCTGCGCATCAGTAACTCGGAGGACATCGCTTGTCATTTAAACCCTCGTTTCAAAACTGGATCTTTTGTTCGAAACTCGTTCCTTCGAGGCTGTTGGGGATCTGAGGAGGTTTCGCTGCCCAGGTTTCCCTTCTCCCCTGGTGAATACTTCGAGATGATCATCTTGTGCGAAGCTCAGGAGTTTAAAGTGGCAGTAAACGGCTTCCACCAACTGAGCTACAAGCACCGCGTGCAGGATCTGAGCAGTGTGGATGTGCTGGAGATCATGGGAGATCTAGAGCTCAGGGATGTGAAGATGTGGTGA

Function

symbol description
lgals8a Predicted to enable carbohydrate binding activity. Predicted to be active in cytoplasm. Orthologous to human LGALS8 (galectin 8).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-22 Predicted to enable carbohydrate binding activity. Predicted to be active in cytoplasm. Orthologous to human LGALS8 (galectin 8).

Ensembl:

ensembl_id ENSDARG00000037066

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034139 False 1495 mRNA 0.46 8 4793516 4814098
TCONS_00034140 True 951 mRNA 0.50 9 4793790 4813801

Neighbor

gene id symbol gene type direction distance location
XLOC_017110 im:7142702 coding upstream 338722 4392687 ~ 4454794 (+)
XLOC_017109 tiam2b coding upstream 448409 4334008 ~ 4345107 (+)
XLOC_017108 CABZ01067979.1 coding upstream 475043 4309521 ~ 4318473 (+)
XLOC_017107 CABZ01067980.1 coding upstream 485781 4304457 ~ 4307735 (+)
XLOC_017106 ipcef1 coding upstream 542754 4221978 ~ 4250762 (+)
XLOC_017112 tmem242 coding downstream 71200 4885298 ~ 4896355 (+)
XLOC_017113 BX649499.2 coding downstream 237091 5051189 ~ 5057952 (+)
XLOC_017114 si:dkey-60a16.1 coding downstream 251170 5065268 ~ 5070324 (+)
XLOC_017115 ccnk coding downstream 260020 5074118 ~ 5094423 (+)
XLOC_017116 dre-mir-7146 coding downstream 260826 5074924 ~ 5075054 (+)
XLOC_017099 LO018608.1 non-coding upstream 1376935 3403647 ~ 3416581 (+)
XLOC_017097 NA non-coding upstream 1477879 3312662 ~ 3315637 (+)
XLOC_017093 CABZ01027815.1 non-coding upstream 1884851 2908551 ~ 2908665 (+)
XLOC_017119 CU571247.1 non-coding downstream 609864 5423962 ~ 5424096 (+)
XLOC_017124 NA non-coding downstream 1398712 6212810 ~ 6214789 (+)
XLOC_017125 CABZ01086587.1 non-coding downstream 1521198 6335296 ~ 6335411 (+)

Expression


Co-expression Network