XLOC_017190 (lpgat1)


Basic Information

Item Value
gene id XLOC_017190
gene name lpgat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 13781779 ~ 13874340 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034249
AACGAGTCTGATTTCAGGCGTGTGTCTTTGATTTGGGGATTTGAGATCGCAGATCCAGAGGTTCGGCCGCGTGACTCCAGCAACATGCGCGTGTGTAACTGAAGCGCATGCATCCGACCACCAGGACACGGACACTCGGAACCGAGTCACGCCGTGGATCAGACGATCTCAAGCTCTCGGGTTCACCGATCACCACCGTCCGCTACATGTGACCGAACCTACCATCCGTCCGTCCGAACCTTCTGCAGCTTCGCCAGTAGGCTGCACGTTAGAAAACGGCAGGACAGTACAGTATGGCTCCCCATCTGGACGTGGCCCGCAAATTGGTTTGGATCTTAATCAAGTCGCTGCTCCGTTTCACCTTCATGTTTGTCAATAACTGTGTCGCGATCCCGTCCTATTGCCTCTACCTGATAGTCCTGCAGCCTTTAAGAGTTCTAGATGCCCAAACATTCTGGTACATTGAAGGGGTCATGTTCAGGTGGTTACTGGCTATGGTGGCATCCTGGGGCTGGTGTgcaggttacacagTGACAGAATGGGGTGATGATGTGAGTCCAATGACTGAAGATGAAGCCATGGTCATAGTCAACCATCAAGCCACTGGAGACGTGTGCACCCTAATGATGTGCTTGCAGGACAAGGGCACGGTTGTACGGAAGATGATGTGGTTGATGGACCATGTTTTTAAATACACCAATTTTGGGGTTGTGTCCTTGATTCACGGAGATTTCTTCATTAGACAGGGCAAAGCACATCGAGAAAAGCAGCTCGTGTACCTAAAGGATCATCTAGACAAGTTTTACTACAGTCGAGACAGGAAGTGGATTGTGCTTTTTCCTGAAGGCGGTTTCCTAAGAAAGAGGCGAGAGACAAGTCAGTCCTTTGCCAAAAAGAATGACTTGCCTTACTTGACTCATGTAACACTGCCACGACTGGGCGCCACACAGATCATCCTGAAGAACTTGGGACCCCAGCAGGAAAATGGCATCCTGGGAACAGATGGAAGTCCGCCAGGTCAAAGTAACAAACCTAAAGGCCTACAGTGGGTAATAGACATGACCATCGCCTATCCTAATGCAAGACCCATGGACATTCAGACATGGATTTTTGGCTACAGAGATCCAACAGTCACGCATGTACACTACAGGACATACCCTATAAAGGACGTTCCAGTAGATTCAGAAGCGCTGACGGATTGGTTATATCAGCGATTCGTGGAAAAGGAGAAACTTCTGGCTCACTTCTATGAGACGGGAGCTTTCCCTCCACTAGATGGTCAAAAAGAGATGGTCTCCCGAGAAATGACCCTGGACAACGCTTGGCTGTTTTTGGTCCAGACGTTCGCCTTCGCCTCAGGCTACATGTGGGATGGAGGAGGGGAACCGCCAGAGACCAAGAGCCCCTTCCCTGATGATCGCCCTTCTCCTCTGCCCCGGATGGTTGAATGTACCCCGCAGGACGACCACTTTCAAGTTGCTGTATCCGATTGCGGTCCCCCATCCTTACTTCGGACAGACACCTCCACCCAAATCCCAGCTGCCCATGCAGATGTGCGTTCATCGTccttttagaatttattttattttttatctttttgggCGTAGAACCAGTTCAACATGTTTACACATGCGCGCGCTCACATGCAGAGAgaaaatttatgcacatctaaATGTTTACTCATGCACATGTGGACACaccttttggtttttatttttgacTTACAATCAAAATTAGGCTCAGGAATAAGCCAGAGATAGATCTGTCACGTCCTATTCTTTCTCATGTTCTGAGCTTCGTCTTTACTTTCGTCCCCAACCGTTTTTATCGTCAAACTCCCAAACAGGATGACTGAAGATTTGTTTTCAGAGACTGCTGTCCTCTTTGGAAGAGCCTCCTCTGGCCTTCATTGCACTATGAATCCTCGTCGCCCGCCCCAAAATGGAAGACCCCGGGTTTTGTCCTGCCCTCATTGTTCACCTCGTGGCCGTTCCGTCTCGTGTTGACTGGATGTGTTTTTGTCagtattgagagagagagagagcgatcgTGATGTTTACACACTGACTGAAAGAGGGATCGGGTTTGGAATGGAAAAAACAAACTGGTTCTTGTTTTAAAATCGACAAAACAAGGAGACTTTACACAATCGACGCCATACAGACACATCCACAAGACTGCCACATGATAGGACAAATAACCCCCTCACCTCCAAAGTTTTACAAATATTAAGCCATATGCTTATCTTCGGGTCGAAAAAGGGGGCGGACATTCTACTGActgaacttttttgttttttgttcattgtcctaaaggaaaaaaaaatattttaatttgtttaaatttatttttgagtcTCATTTCTGTACATGTGACAGCGTAACCTGCCTGTGCGATTGTGTGCGACtgcccattttatttttttgatttttaaaaaaaattttttttagatgCACATAATGTCTGGTAGCTTAATGTTATATCAGAGTGTTGGCAAATATctgtttaaatagttttatttgtattttttcttcctCATCCTTGTACAGAAGGGAGTGCGAGCTGGAACGGccgaattacattttttttgttgttgttgtttttacttctgAAATATCATGAATGTTTAGGAAAGACGAAGGAGAGAGGAAAGAATTCTGTCCTGGCAGGTGCTTTGTTGCTCTCAGTATCTGAGCATCGCCTCGTTTGCCGTTTTTTTTCCCCAGCGGTGATCGTGTCGTGTTCATCAAAATCGTCTGGAAACTGCTGCCACAGGCAAGGGATCAGAGATTAGATTGAGTTTTGTGCTGAGGCGCGGAAATATTTTAGACTAGCTTTAGACTATCTTGAGGAAAGTGCCGACGTTTTCCTCGAGCTTGAGACAAAACTGCATTTTTCATGTGTGAAAttgagacgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgttgattgaGTCCGTCTACATGTGCTCCTCGTGTCGAAGGGAAAAAATGGGTGAAGTCCAGCAATAATGTACTCAAAAATAAATGCCCATGTTGTGGCGCTCTAAAGAAGCAGTGCTTAGATGTACAAATTAGACATTTGTAGATGAAAACATTGCACCGTAATTGTCATCCCCCCCTCCTTTTATCCGAAGCCATGTCATTTGTGAAAGTGGACTTTGTTTCTATAGCTTGCCAGATTGAAATGTGAATGACGCCAGAAGACTAAAGCCAAGTTAGATGCGGACTGCATTCAAAGCAGGCTACGTCACTGCGAGGATCTCCTCGTCTCATTCTCGCCGTGTCTTTCAGATGGAGacgtaacatttttgttttcctaagtatggtttttatgtttaaaaaaaaaaaaagacgtcaTCAACGAAGTGTGAGATATATCTATATATTAGCAATTTAACCAAATTACAATAGAATGGTCCATGATTTTCATTTTGTACTCCTGTTTCTCTTCCTAGCTACCCAGCCATTTTACAACACACAGATTAATTGTGCTGGAATAAAAATCATGCGCAGCAGTGAA
>TCONS_00034250
AAGCGCATGCATCCGACCACCAGGACACGGACACTCGGAACCGAGTCACGCCGTGGATCAGACGATCTCAAGCTCTCGGGTTCACCGATCACCACCGTCCGCTACATGTGACCGAACCTACCATCCGTCCGTCCGAACCTTCTGCAGCTTCGCCAGTAGGCTGCACGTTAGAAAACGGTGAGAAAACACTTTCACGTGAAGATTGGAGGATTAATGACATCAGATTGTTTCAGGCAGGACAGTACAGTATGGCTCCCCATCTGGACGTGGCCCGCAAATTGGTTTGGATCTTAATCAAGTCGCTGCTCCGTTTCACCTTCATGTTTGTCAATAACTGTGTCGCGATCCCGTCCTATTGCCTCTACCTGATAGT
>TCONS_00034251
ATAACAAAGGTTAATGGATGCGTGTTAGTAAATCAGTTCACATGCGCAGGACAGTACAGTATGGCTCCCCATCTGGACGTGGCCCGCAAATTGGTTTGGATCTTAATCAAGTCGCTGCTCCGTTTCACCTTCATGTTTGTCAATAACTGTGTCGCGATCCCGTCCTATTGCCTCTACCTGATAGTCCTGCAGCCTTTAAGAGTTCTAGATGCCCAAACATTCTGGTACATTGAAGGGGTCATGTTCAGGTGGTTACTGGCTATGGTGGCATCCTGGGGCTGGTGTgcaggttacacagTGACAGAATGGGGTGATGATGTGAGTCCAATGACTGAAGATGAAGCCATGGTCATAGTCAACCATCAAGCCACTGGAGACGTGTGCACCCTAATGATGTGCTTGCAGGACAAGGGCACGGTTGTACGGAAGATGATGTGGTTGATGGACCATGTTTTTAAATACACCAATTTTGGGGTTGTGTCCTTGATTCACGGAGATTTCTTCATTAGACAGGGCAAAGCACATCGAGAAAAGCAGCTCGTGTACCTAAAGGATCATCTAGACAAGTTTTACTACAGTCGAGACAGGAAGTGGATTGTGCTTTTTCCTGAAGGCGGTTTCCTAAGAAAGAGGCGAGAGACAAGTCAGTCCTTTGCCAAAAAGAATGACTTGCCTTACTTGACTCATGTAACACTGCCACGACTGGGCGCCACACAGATCATCCTGAAGAACTTGGGACCCCAGCAGGAAAATGGCATCCTGGGAACAGATGGAAGTCCGCCAGGTCAAAGTAACAAACCTAAAGGCCTACAGTGGGTAATAGACATGACCATCGCCTATCCTAATGCAAGACCCATGGACATTCAGACATGGATTTTTGGCTACAGAGATCCAACAGTCACGCATGTACACTACAGGACATACCCTATAAAGGACGTTCCAGTAGATTCAGAAGCGCTGACGGATTGGTTATATCAGCGATTCGTGGAAAAGGAGAAACTTCTGGCTCACTTCTATGAGACGGGAGCTTTCCCTCCACTAGATGGTCAAAAAGAGATGGTCTCCCGAGAAATGACCCTGGACAACGCTTGGCTGTTTTTGGTCCAGACGTTCGCCTTCGCCTCAGGCTACATGTGGTACAGCATTCTCCATCACATCTACTTCTGGCTCTTCTGACTGCTCTGAGGATCCCGTAACGCGCAGGGATGGAGGAGGGGAACCGCCAGAGACCAAGAGCCCCTTCCCTGATGATCGCCCTTCTCCTCTGCCCCGGATGGTTGAATGTACCCCGCAGGACGACCACTTTCAAGTTGCTGTATCCGATTGCGGTCCCCCATCCTTACTTCGGACAGACACCTCCACCCAAATCCCAGCTGCCCATGCAGATGTGCGTTCATCGTccttttagaatttattttattttttatctttttgggCGTAGAACCAGTTCAACATGTTTACACATGCGCGCGCTCACATGCAGAGAgaaaatttatgcacatctaaATGTTTACTCATGCACATGTGGACACaccttttggtttttatttttgacTTACAATCAAAATTAGGCTCAGGAATAAGCCAGAGATAGATCTGTCACGTCCTATTCTTTCTCATGTTCTGAGCTTCGTCTTTACTTTCGTCCCCAACCGTTTTTATCGTCAAACTCCCAAACAGGATGACTGAAGATTTGTTTTCAGAGACTGCTGTCCTCTTTGGAAGAGCCTCCTCTGGCCTTCATTGCACTATGAATCCTCGTCGCCCGCCCCAAAATGGAAGACCCCGGGTTTTGTCCTGCCCTCATTGTTCACCTCGTGGCCGTTCCGTCTCGTGTTGACTGGATGTGTTTTTGTCagtattgagagagagagagagcgatcgTGATGTTTACACACTGACTGAAAGAGGGATCGGGTTTGGAATGGAAAAAACAAACTGGTTCTTGTTTTAAAATCGACAAAACAAGGAGACTTTACACAATCGACGCCATACAGACACATCCACAAGACTGCCACATGATAGGACAAATAACCCCCTCACCTCCAAAGTTTTACAAATATTAAGCCATATGCTTATCTTCGGGTCGAAAAAGGGGGCGGACATTCTACTGActgaacttttttgttttttgttcattgtcctaaaggaaaaaaaaatattttaatttgtttaaatttatttttgagtcTCATTTCTGTACATGTGACAGCGTAACCTGCCTGTGCGATTGTGTGCGACtgcccattttatttttttgatttttaaaaaaaattttttttagatgCACATAATGTCTGGTAGCTTAATGTTATATCAGAGTGTTGGCAAATATctgtttaaatagttttatttgtattttttcttcctCATCCTTGTACAGAAGGGAGTGCGAGCTGGAACGGccgaattacattttttttgttgttgttgtttttacttctgAAATATCATGAATGTTTAGGAAAGACGAAGGAGAGAGGAAAGAATTCTGTCCTGGCAGGTGCTTTGTTGCTCTCAGTATCTGAGCATCGCCTCGTTTGCCGTTTTTTTTCCCCAGCGGTGATCGTGTCGTGTTCATCAAAATCGTCTGGAAACTGCTGCCACAGGCAAGGGATCAGAGATTAGATTGAGTTTTGTGCTGAGGCGCGGAAATATTTTAGACTAGCTTTAGACTATCTTGAGGAAAGTGCCGACGTTTTCCTCGAGCTTGAGACAAAACTGCATTTTTCATGTGTGAAAttgagacgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgttgattgaGTCCGTCTACATGTGCTCCTCGTGTCGAAGGGAAAAAATGGGTGAAGTCCAGCAATAATGTACTCAAAAATAAATGCCCATGTTGTGGCGCTCTAAAGAAGCAGTGCTTAGATGTACAAATTAGACATTTGTAGATGAAAACATTGCACCGTAATTGTCATCCCCCCCTCCTTTTATCCGAAGCCATGTCATTTGTGAAAGTGGACTTTGTTTCTATAGCTTGCCAGATTGAAATGTGAATGACGCCAGAAGACTAAAGCCAAGTTAGATGCGGACTGCATTCAAAGCAGGCTACGTCACTGCGAGGATCTCCTCGTCTCATTCTCGCCGTGTCTTTCAGATGGAGacgtaacatttttgttttcctaagtatggtttttatgtt
>TCONS_00034252
AAGGTTAATGGATGCGTGTTAGTAAATCAGTTCACATGCGCAGGACAGTACAGTATGGCTCCCCATCTGGACGTGGCCCGCAAATTGGTTTGGATCTTAATCAAGTCGCTGCTCCGTTTCACCTTCATGTTTGTCAATAACTGTGTCGCGATCCCGTCCTATTGCCTCTACCTGATAGTCCTGCAGCCTTTAAGAGTTCTAGATGCCCAAACATTCTGGTACATTGAAGGGGTCATGTTCAGGTGGTTACTGGCTATGGTGGCATCCTGGGGCTGGTGTgcaggttacacagTGACAGAATGGGGTGATGATGTGAGTCCAATGACTGAAGATGAAGCCATGGTCATAGTCAACCATCAAGCCACTGGAGACGTGTGCACCCTAATGATGTGCTTGCAGGACAAGGGCACGGTTGTACGGAAGATGATGTGGTTGATGGACCATGTTTTTAAATACACCAATTTTGGGGTTGTGTCCTTGATTCACGGAGATTTCTTCATTAGACAGGGCAAAGCACATCGAGAAAAGCAGCTCGTGTACCTAAAGGATCATCTAGACAAGTTTTACTACAGTCGAGACAGGAAGTGGATTGTGCTTTTTCCTGAAGGCGGTTTCCTAAGAAAGAGGCGAGAGACAAGTCAGTCCTTTGCCAAAAAGAATGACTTGCCTTACTTGACTCATGTAACACTGCCACGACTGGGCGCCACACAGATCATCCTGAAGAACTTGGGACCCCAGCAGGAAAATGGCATCCTGGGAACAGATGGAAGTCCGCCAGGTCAAAGTAAGCCACTAAATCACT

Function

symbol description
lpgat1 Predicted to enable acyltransferase activity. Predicted to be involved in phosphatidylinositol acyl-chain remodeling. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human LPGAT1 (lysophosphatidylglycerol acyltransferase 1).

GO:

id name namespace
GO:0036149 phosphatidylinositol acyl-chain remodeling biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-030131-2906 Predicted to enable acyltransferase activity. Predicted to be involved in phosphatidylinositol acyl-chain remodeling. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human LPGAT1 (lysophosphatidylglycerol acyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000013542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034249 False 3529 mRNA 0.45 9 13781779 13874340
TCONS_00034250 False 373 mRNA 0.52 2 13781880 13783352
TCONS_00034251 False 3179 mRNA 0.45 8 13783040 13874156
TCONS_00034252 True 802 mRNA 0.48 5 13783046 13818055

Neighbor

gene id symbol gene type direction distance location
XLOC_017189 NA coding upstream 116728 13640945 ~ 13665051 (+)
XLOC_017188 sytl3 coding upstream 216059 13533544 ~ 13565720 (+)
XLOC_017187 enpp1 coding upstream 260769 13403281 ~ 13521010 (+)
XLOC_017186 ppp2r5a coding upstream 469861 13175379 ~ 13311918 (+)
XLOC_017185 dtl coding upstream 607614 13141408 ~ 13174165 (+)
XLOC_017191 nek2 coding downstream 8791 13883131 ~ 13913790 (+)
XLOC_017192 si:dkey-249p7.4 coding downstream 81766 13956106 ~ 13959214 (+)
XLOC_017193 rd3 coding downstream 95074 13969414 ~ 13997835 (+)
XLOC_017194 NA coding downstream 140472 14014812 ~ 14041218 (+)
XLOC_017195 kcns3b coding downstream 239918 14114258 ~ 14118296 (+)
XLOC_017184 BX547930.2 non-coding upstream 778596 13001068 ~ 13003183 (+)
XLOC_017183 BX547930.3 non-coding upstream 807058 12968914 ~ 12974721 (+)
XLOC_017182 BX547930.1 non-coding upstream 872654 12907233 ~ 12909125 (+)
XLOC_017179 NA non-coding upstream 1099639 12642740 ~ 12682140 (+)
XLOC_017196 NA non-coding downstream 269736 14144076 ~ 14147484 (+)
XLOC_017198 NA non-coding downstream 613417 14487757 ~ 14623918 (+)
XLOC_017199 BX901920.1 non-coding downstream 782801 14657141 ~ 14661432 (+)
XLOC_017202 mir199-3a non-coding downstream 1001120 14875460 ~ 14875546 (+)

Expression


Co-expression Network