XLOC_017343 (irf4b)


Basic Information

Item Value
gene id XLOC_017343
gene name irf4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26556174 ~ 26563832 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034504
CTACGTTACTGACACATTTCAAAACTCGAAAGCTGTGAGAACGACCAGCACGCGCTTCTGTACCTTCTGCAaTGTGTTCGGATGAAGAGCGCGGGATGACGGGGAGCTCCGGTAACGGAAAGTTGCGCCAGTGGCTGATCGAGCAGGTGGACACTGGAAAATACCCTGGACTCGTATGGGAGAACGACGAGAAGAGCATCTTTCGGATTCCGTGGAAGCACGCGGGCAAACAGGACTACAACAGGGACGAGGATGCTGCGCTCTTCAAGGCTTGGGCTCTGTTTAAAGGCAAATTCCGTGAAGGGGTCGACAAACCTGACCCACCAACCTGGAAAACACGTCTTCGTTGTGCTCTTAATAAAAGTAATGACTTCGAGGAGATTGTGGAGCGCAGTCAACTTGACATATCGGACCCCTATAAAGTATATAGGATTGTCCCGGAAGGATCTAAAAAAGGATCCAGATCTATTGAAGACTCGCAGTCTAACTCAGGCTCTCCCAATTATCCAATGCATCCAACTTATGCACCAGCACCATCTCAGGTGTGCAACTACATTTCTCCAGCAGAAAGAGGATGGAGGGAGTATCCCACCCTCTCTGACATCTCGTACAGCCAGAGCCCGTACACTTCACGCTGGGACCCTGGTTACCAGTTCAGTGGCTCCTTCTACAGCTGTAATGCATCTGATCCACAGCCGTCACCCTTCACTCTGGACACCAGCATGAGGTCTGCTGAGGCCATGGCACTCTCAGATTATCGCCTGCATGTGATGGTGTTTTACCGAGACGCGCTGGTGCGAGAGGTGACCGTGAGCAGTCCTGAGGGCTGTCAGCTGGGCCCCAGCAGAGAGGGACAGGCCTACGCCTCACCTGGGGCTCCAGAACTGGTTGAACTGCCTCATGCTGATGGGGTGCCTCTGGAGCGGGGCGTTATTCTCTGGATGGCTCCTGATGGGCTCTACGCCCGCCGATGCTGCCCCTGCAGGGTGTACTGGACAGGAGCTCACGCACCACCGACAGACAAACCCAACAAGCTGGAGCGAGAGCAGAACTGCAAACTGCTGGACACTCACCTCTTCATCACAGAGTTGCAGAGCTACACTCTTCACGCCCGTCCTGCGCCGTGTTCCCAAGTGTTGCTGTTCTTTGAGGATGAAAGCACTGAGGGTCAAAGACCAAGAAGGACCTACACAGTGCAGGTTGAGCCACTGTTCGCTCGCCAGCTTCTGATCCTCACTCACCCGGGCAGCATGAACTACATCCGCAGCCATGAGCTCCAGCACCTGCCACCTGAACACAGCCTTTCACCCACCCAAGACTACCACAGGGTCATCACACACCACCACAACAGCGGCCCGCAAAACTGACCCGCTAAACCTTGAGTTTAACCCTGGGATAAAGCAAGTTTTAATCCTGGGTTAAAGGCTGACTTCACCTTCACCCTTTTCCTTCTGTGGAACATACAAgtagacattttgaagaatactgAGAAGCGAATGACACTTGAGCTCAATAACTTCTGCTGTATGGTCAAGtcacatttatttttagtgtataGCACTTTGTGCAATGCaaattgtcaaagcag
>TCONS_00034505
aTGTGTTCGGATGAAGAGCGCGGGATGACGGGGAGCTCCGGTAACGGAAAGTTGCGCCAGTGGCTGATCGAGCAGGTGGACACTGGAAAATACCCTGGACTCGTATGGGAGAACGACGAGAAGAGCATCTTTCGGATTCCGTGGAAGCACGCGGGCAAACAGGACTACAACAGGGACGAGGATGCTGCGCTCTTCAAGGCTTGGGCTCTGTTTAAAGGCAAATTCCGTGAAGGGGTCGACAAACCTGACCCACCAACCTGGAAAACACGTCTTCGTTGTGCTCTTAATAAAAGTAATGACTTCGAGGAGATTGTGGAGCGCAGTCAACTTGACATATCGGACCCCTATAAAGTATATAGGATTGTCCCGGAAGGATCTAAAAAAGgcaagagacaaaaaaaaaatcaactATGGAATCTGAATTGCAGATGTGAATGTTTCAGTCGGGTAAAAAAAAACAGGCGGAGTTCAAACAGACTAAATGAGAGGTAG
>TCONS_00034506
aTGTGTTCGGATGAAGAGCGCGGGATGACGGGGAGCTCCGGTAACGGAAAGTTGCGCCAGTGGCTGATCGAGCAGGTGGACACTGGAAAATACCCTGGACTCGTATGGGAGAACGACGAGAAGAGCATCTTTCGGATTCCGTGGAAGCACGCGGGCAAACAGGACTACAACAGGGACGAGGATGCTGCGCTCTTCAAGGCTTGGGCTCTGTTTAAAGGCAAATTCCGTGAAGGGGTCGACAAACCTGACCCACCAACCTGGAAAACACGTCTTCGTTGTGCTCTTAATAAAAGTAATGACTTCGAGGAGATTGTGGAGCGCAGTCAACTTGACATATCGGACCCCTATAAAGTATATAGGATTGTCCCGGAAGGATCTAAAAAAGGATCCAGATCTATTGAAGACTCGCAGTCTAACTCAGGCTCTCCCAATTATCCAATGCATCCAACTTATGCACCAGCACCATCTCAGGTGTGCAACTACATTTCTCCAGCAGAAAGAGGATGGAGGGAGTATCCCACCCTCTCTGACATCTCGTACAGCCAGAGCCCGTACACTTCACGCTGGGACCCTGGTTACCAGTTCAGTGGCTCCTTCTACAGCTGTAATGCATCTGATCCACAGCCGTCACCCTTCACTCTGGACACCAGCATGAGGTCTGCTGAGGCCATGGCACTCTCAGATTATCGCCTGCATGTGATGGTGTTTTACCGAGACGCGCTGGTGCGAGAGGTGACCGTGAGCAGTCCTGAGGGCTGTCAGCTGGGCCCCAGCAGAGAGGGACAGGCCTACGCCTCACCTGGGGCTCCAGAACTGGTTGAACTGCCTCATGCTGATGGGGTGCCTCTGGAGCGGGGCGTTATTCTCTGGATGGCTCCTGATGGGCTCTACGCCCGCCGATGCTGCCCCTGCAGGGTGTACTGGACAGGAGCTCACGCACCACCGACAGACAAACCCAACAAGCTGGAGCGAGAGCAGAACTGCAAACTGCTGGACACTCACCTCTTCATCACAGAGTTGCAGAGCTACACTCTTCACGCCCGTCCTGCGCCGTGTTCCCAAGTGTTGCTGTTCTTTGAGGATGAAAGCACTGAGGGTCAAAGACCAAGAAGGACCTACACAGTGCAGGTTGAGCCACTGTTCGCTCGCCAGCTTCTGATCCTCACTCACCCGGGCAGCATGAACTACATCCGCAGCCATGAGCTCCAGCACCTGCCACCTGAACACAGCCTTTCACCCACCCAAGACTACCACAGGGTCATCACACACCACCACAACAGCGGCCCGCAAAACTGA
>TCONS_00036595
GAGCGCGGGATGACGGGGAGCTCCGGTAACGGAAAGTTGCGCCAGTGGCTGATCGAGCAGGTGGACACTGGAAAATACCCTGGACTCGTATGGGAGAACGACGAGAAGAGCATCTTTCGGATTCCGTGGAAGCACGCGGGCAAACAGGACTACAACAGGGACGAGGATGCTGCGCTCTTCAAGGCTTGGGCTCTGTTTAAAGGCAAATTCCGTGAAGGGGTCGACAAACCTGACCCACCAACCTGGAAAACACGTCTTCGTTGTGCTCTTAATAAAAGTAATGACTTCGAGGAGATTGTGGAGCGCAGTCAACTTGACATATCGGACCCCTATAAAGTATATAGGATTGTCCCGGAAGGATCTAAAAAAGgcaagaGATCCAGATCTATTGAAGACTCGCAGTCTAACTCAGGCTCTCCCAATTATCCAATGCATCCAACTTATGCACCAGCACCATCTCAGGTGTGCAACTACATTTCTCCAGCAGAAAGAGGATGGAGGGAGTATCCCACCCTCTCTGACATCTCGTACAGCCAGAGCCCGTACACTTCACGCTGGGACCCTGGTACAAGAAACTATAAGGAAGTTCATGCAGCTTGCAATTGCAGTTACCAGTTCAGTGGCTCCTTCTACAGCTGTAATGCATCTGATCCACAGCCGTCACCCTTCACTCTGGACACCAGCATGAGGTCTGCTGAGGCCATGGCACTCTCAGATTATCGCCTGCATGTGATGGTGTTTTACCGAGACGCGCTGGTGCGAGAGGTGACCGTGAGCAGTCCTGAGGGCTGTCAGCTGGGCCCCAGCAGAGAGGGACAGGCCTACGCCTCACCTGGGGCTCCAGAACTGGTTGAACTGCCTCATGCTGATGGGGTGCCTCTGGAGCGGGGCGTTATTCTCTGGATGGCTCCTGATGGGCTCTACGCCCGCCGATGCTGCCCCTGCAGGGTGTACTGGACAGGAGCTCACGCACCACCGACAGACAAACCCAACAAGCTGGAGCGAGAGCAGAACTGCAAACTGCTGGACACTCACCTCTTCATCACAGAGTTGCAGAGCTACACTCTTCACGCCCGTCCTGCGCCGTGTTCCCAAGTGTTGCTGTTCTTTGAGGATGAAAGCACTGAGGGTCAAAGACCAAGAAGGACCTACACAGTGCAGGTTGAGCCACTGTTCGCTCGCCAGCTTCTGATCCTCACTCACCCGGGCAGCATGAACTACATCCGCAGCCATGAGCTCCAGCACCTGCCACCTGAACACAGCCTTTCACCCACCCAAGACTACCACAGGGTCATCACACACCACCACAACAGCGGC

Function

symbol description
irf4b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axis; chordo neural hinge; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Orthologous to human IRF4 (interferon regulatory factor 4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002376 immune system process biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-131 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axis; chordo neural hinge; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Orthologous to human IRF4 (interferon regulatory factor 4).

Ensembl:

ensembl_id ENSDARG00000055374

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034504 False 1588 mRNA 0.52 9 26556174 26563832
TCONS_00034505 False 492 mRNA 0.48 3 26556372 26560386
TCONS_00034506 False 1296 mRNA 0.55 8 26556372 26563611
TCONS_00036595 True 1317 lncRNA 0.55 9 26556387 26563599

Neighbor

gene id symbol gene type direction distance location
XLOC_017342 stx11b.1 coding upstream 14997 26538137 ~ 26541177 (+)
XLOC_017341 zbtb2b coding upstream 148941 26394324 ~ 26407233 (+)
XLOC_017340 NA coding upstream 196740 26095530 ~ 26359434 (+)
XLOC_017339 AL954831.1 coding upstream 490230 26059710 ~ 26065944 (+)
XLOC_017338 nrbp1 coding upstream 531250 26002534 ~ 26024924 (+)
XLOC_017344 BX537272.1 coding downstream 30932 26594764 ~ 26594879 (+)
XLOC_017345 foxq1b coding downstream 120101 26683933 ~ 26685395 (+)
XLOC_017346 foxf2b coding downstream 126204 26690036 ~ 26692944 (+)
XLOC_017347 foxc1b coding downstream 138545 26702377 ~ 26704331 (+)
XLOC_017348 NA coding downstream 140552 26704384 ~ 26706029 (+)
XLOC_017331 CR352243.1 non-coding upstream 912419 25643044 ~ 25643755 (+)
XLOC_017327 BX322665.3 non-coding upstream 974718 25580906 ~ 25581456 (+)
XLOC_017323 BX322665.1 non-coding upstream 994357 25558878 ~ 25561817 (+)
XLOC_017351 BX248515.1 non-coding downstream 335913 26899745 ~ 26902268 (+)
XLOC_017362 NA non-coding downstream 544874 27108706 ~ 27113992 (+)
XLOC_017363 NA non-coding downstream 631020 27194852 ~ 27198481 (+)

Expression


Co-expression Network