Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00034506 |
| length | 1296 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 8 |
| gene id | XLOC_017343 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 26556174 ~ 26563832 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041001-131 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in immune system process and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including axis; chordo neural hinge; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Orthologous to human IRF4 (interferon regulatory factor 4). |
| ensembl_id | ENSDART00000157291 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036594 | lncRNA | upstream | 342551 | 26095530 ~ 26213821 (+) | False | XLOC_017340 |
| TCONS_00034499 | lncRNA | upstream | 490428 | 26059710 ~ 26065944 (+) | True | XLOC_017339 |
| TCONS_00036593 | lncRNA | upstream | 670671 | 25880309 ~ 25885701 (+) | True | XLOC_017334 |
| TCONS_00034490 | lncRNA | upstream | 905280 | 25650477 ~ 25651092 (+) | True | XLOC_017332 |
| TCONS_00034487 | lncRNA | upstream | 912617 | 25643044 ~ 25643755 (+) | True | XLOC_017331 |
| TCONS_00036596 | lncRNA | downstream | 140773 | 26704384 ~ 26706029 (+) | True | XLOC_017348 |
| TCONS_00034515 | lncRNA | downstream | 341547 | 26905158 ~ 26913676 (+) | False | XLOC_017352 |
| TCONS_00034517 | lncRNA | downstream | 341599 | 26905210 ~ 26913507 (+) | True | XLOC_017352 |
| TCONS_00034533 | lncRNA | downstream | 440060 | 27003671 ~ 27004507 (+) | False | XLOC_017358 |
| TCONS_00036597 | lncRNA | downstream | 545095 | 27108706 ~ 27113992 (+) | True | XLOC_017362 |
| TCONS_00034503 | mRNA | upstream | 15195 | 26538137 ~ 26541177 (+) | True | XLOC_017342 |
| TCONS_00034502 | mRNA | upstream | 149139 | 26394324 ~ 26407233 (+) | True | XLOC_017341 |
| TCONS_00034500 | mRNA | upstream | 196938 | 26095530 ~ 26359434 (+) | False | XLOC_017340 |
| TCONS_00034501 | mRNA | upstream | 201219 | 26349002 ~ 26355153 (+) | True | XLOC_017340 |
| TCONS_00034498 | mRNA | upstream | 531448 | 26002534 ~ 26024924 (+) | True | XLOC_017338 |
| TCONS_00034508 | mRNA | downstream | 120322 | 26683933 ~ 26685395 (+) | True | XLOC_017345 |
| TCONS_00034509 | mRNA | downstream | 126425 | 26690036 ~ 26692944 (+) | True | XLOC_017346 |
| TCONS_00034510 | mRNA | downstream | 138766 | 26702377 ~ 26704331 (+) | True | XLOC_017347 |
| TCONS_00034511 | mRNA | downstream | 317057 | 26880668 ~ 26886849 (+) | False | XLOC_017349 |
| TCONS_00034512 | mRNA | downstream | 317989 | 26881600 ~ 26888698 (+) | True | XLOC_017349 |
| TCONS_00034480 | other | upstream | 974916 | 25580906 ~ 25581456 (+) | True | XLOC_017327 |
| TCONS_00034475 | other | upstream | 994555 | 25558878 ~ 25561817 (+) | True | XLOC_017323 |
| TCONS_00034473 | other | upstream | 1001357 | 25533064 ~ 25555015 (+) | False | XLOC_017322 |
| TCONS_00034470 | other | upstream | 1087223 | 25466570 ~ 25469149 (+) | True | XLOC_017320 |
| TCONS_00034463 | other | upstream | 1319248 | 25237009 ~ 25237124 (+) | True | XLOC_017317 |
| TCONS_00034507 | other | downstream | 31153 | 26594764 ~ 26594879 (+) | True | XLOC_017344 |
| TCONS_00034514 | other | downstream | 336134 | 26899745 ~ 26902268 (+) | True | XLOC_017351 |
| TCONS_00034520 | other | downstream | 376147 | 26939758 ~ 26943286 (+) | False | XLOC_017354 |
| TCONS_00034523 | other | downstream | 376522 | 26940133 ~ 26940555 (+) | False | XLOC_017354 |
| TCONS_00034547 | other | downstream | 774395 | 27338006 ~ 27338121 (+) | True | XLOC_017366 |
