RNA id: TCONS_00036594


Basic Information

Item Value
RNA id TCONS_00036594
length 4033
lncRNA type sense_over
GC content 0.49
exon number 28
gene id XLOC_017340
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26095530 ~ 26359434 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTTTGACTGCTTATTTCAAAATAGCAAGAAAGAAATAGTTTTTGTCTGTACTGACAAGCAGCAGAGCAGAATATTTAGGAAAGGAGCAGCAGAAGCTCCACAAGGGGGTGTTTGAGAGTAGTTGACCCTGTGGGAGCCCTCTGAACGTCACAGGTAGATCTGCACTTCATGGACTTGATGTCACTGAGGTTTTGTGGGGATGGAAGTCAAGGGCAAAGTGGCAAGACGATGGGAGGACGTGGCTGCCAAGAAGAAGTCTGGCAATTCCCTTAACTTAGTTCAAGGGGTTTCTCAGCACCTGCGTGATGAACAGGAAGCTGTGCAGAAGAGAACTTTCACTAAATGGATCAACTCTCATCTGGCAAAGcgTAATCCTCCGTTGGTGGTCTCAGATCTTTTTGAAGATGTTAAAGATGGAGTGATGTTATTGGCTCTCCTTGAAGTCTTGTCAGGTCATAAACTGCCGTGTGAGCAGGGCCGCAAGCTGAGGAGAATCCACTGGGTCGCCAATGTTGGAAGAGCGctcaagtttctggagggcagaAGGGTAAGGCAGTCCATTCCCACAattAAGTTGGTTAACATCAACACAACAGATGTGGTAGATGGCAGACCCTCTATTGTGCTGGGGTTAATATGGACCATCATCTTATATTTCCAGATCGAGGAGTTGACCAGTCATTTACCAGCCCTACAACCTCAATCCAGCAGCAACTCATCAGTGGAAAGCTCCAACAGCACTGAGACCAGCAGCCCGCCAGTCAAACGCAAGCCCCGCCTTTCTTTTCAGGGCGGAGCCAAGAGGGCCCTTCTTAAATGGGTCCAGAACACAGCAACAAAGAGAATGGGTCTGGATGTGAAGGACTTTGGCCCCAGCTGGCGCACAGGGGTGGCTTTTCATGCTGTCATCTTTGCTTTGCGACCCCATCTGGTTAACATGGAGCGTGTTTGGAGGAGAGGCAACAGGGAGAACCTAGAGGAGGCCTTCTCGTTGGCTGAGCGAGAGTTGGGCATCCCACGACTACTTGACCCTGAAGATGTGGATGTGGATAAACCAGATGAGAAGTCCATCATGACTTATGTGGCACAGTTTCTGAAGCATCATCCAGACCGTCAACACACCGAGACTGGACAGCAGCAAGAGGAGAAGGAGCAGAGGAAGACTCTGAGGGAGCTGAAAGCGTGGGCAGATCAGATGGAGAGAGACTGCGCTCAAGCCCAGAGGGACGGAGGGAGTCTCACTGTACGATACCAGACATTCAAGCGTTTTCGTGTGCAGTTTGAGGTGCAGAGAAGACAAGTGGAGACGTGCGTTCAGTCCACTCAGAAGGACGGAAAGCTGACTGCAGACCAAGCTCTGGTCAAACAGGCCTGGGAGAGACTGTGCAAGAGGCTCTTGGATTGGCATCTTCAGCTGGACAGCGGTTTGCCACATCCACTGGGGGAGGTCGGTGTGTGGTTACATCAGGCAGAGGAGATTCTGCGAGAGGAACTGATCCCTCAACAAGCCCACGATGAGACCGCCAAAGCTATTCACAAAAAACGACTGCGTGACCAGgAGATCTTAAGGCTTCTTGAAAGACACAAACAGACCTTGCAGTTAATACACCGAGACAGATGTGTTAATAATATGCCTATTCCCACAGAACAACTGCAAGACATGGCAGAGCGATTACACTACATATCTACCTCTTCACACATTCACTTGAGCAAACTGGAATTCTGGGAGTCGAAATACAGCATGCTGGCATTTTTAACACTGGCTGAGTCCAAACTGAAATCCTGGATCATTAAATACGGCCGACTGGAGTCAATGGAGCTTCTGCTACAAAGCTATGGTACTTTTGTGGAGGGCCAGCAGTTCTTTGAGAAGTATGAATCCAGCCACCAGTCTCTGTTACAAGCTGCAGAGCTCTACATTAAAGCAGACAGCTCAGTTGAGGGAGTGGTAAAGCTGTTCCTGCGAGAGGTGTGTGATCAGTGGAGGAGTCTCTCAGTGGAGGTGCGGAGCGTGAGGTCCATGCTGGAAGAGGTGCAGTGTAACTGGCTGAGGTACAACAGCTGTGTGGCCTCACTGCAGGCCTGGCTAGAGGACGCACAGGGGGCTCTCAGACAACCGGAGAATACCAAACGGGAGTTTTTTCGTAATCTTCCTCACTGGATGGACCAGCATGCTGCTATGAACGATGCAGGAAACTTTCTGATCGAGACCTGTGATGAAACAGTAACTCGTGACGTGAAGCATCAGCTTCTGCTGCTCAATGGAAGATGGAGAGAGCTGTTTCTTAAGGTCAAACAGtACGCCCGTCTTCCTGAGACCCATAATGTGAGAATACACCAGGACATACAAGAGTTTCTGGATGCTTCTATTAATAAACTTACCTCACCACTTCAAGTGTCATTGCTGGATGTGAAAGCCTTTATGCAGGATGTTGAGGAGATCAAGCACAAGCTGCCTGCTGTGGAAGCACAATATAAGGCGGCTGCTCGCTCTGCACAGCTTCTGGCCAAAGTTCATGGTGGCGGAAATAAAGCCCGTTCTACAATACCAACAACAGAAGCACATCTCCATCAGCTGAAGGAAAAGTGTCCTTTAACACTTAAGGAGTGCCAGGCACTGTTTCCTCTGTTAGAAGAGCTTGAGAAACAAATCTCAGCTTTCTATCAGACAGCGGAGGACGCTGGACACATCATCACACAGCAACACAACCAGGAAATGTGCCAGGAGCTACAAACTCAACAGCAGACCTGTAAGCGCTGTGTTTGTGCTATTGAGCGCAGTTATCTGGCCCTACAGAGAGCGCTGTGCTGTGCCAAGTCTCTGCATAACTTTGACACATCTCTTCTGCAGAACAGAGTAACAGAGATTCAGACCACTGCACAGGCTCTGATGCAGGAGGCTTTGGAGTGGAGACAAGTAGCAGAGACTAATGGGAGCCTCATGCGCCGGTTTGAGGAGTCTCGTGCTGACCTGGAGAAGGCGCTGCGCGTGGGACAGGCTTGTTTAAAAGAAAGGGGAGACCCAGATGAGCTGTTCCGCAAACATAATGAGTTCTTTGGGCGACTGGACCAACACATTTTAAGTGCTTATTTAAAGGCGTGTGATGACCTCACTGATATTATCTCAGAGGAAGACCAAAAGAGTCTGCGGGACACTGTCAGAAGACTGCACAAGCAGTGGAAGgacATTCAAGCCGAGGCTCCCGCTCATCTGCTCAGACTCCGGGTGGAAACAGAGAGACGTTTTGTGATGGCCACATTACAGGACTGTAGAGTTGAGCTGAAAAGAGAGGACAAGGCCTTGCCTGCTGCTGGGAGTGAAAAAATTATCAAAGAACACAGGGCGTATTTCAGACAGAAAACCCCACTTTCAGCATGTGAGAAGCGACTGAAGACAATGAAGCATTTCTGTCAGGAACTTCCAGAAAACGACAGAGGTTATCAAATGTTGGAAGGGGCCAAAGATCATCTTTTAGAGGTCAAGGGTTTAGTAGACCAAACACACCTGAGACTACAACAGCACCCGGATAAATGGAGAGAGTGGCATGTTAGGTTCAGTAAGCTGTCTGAATGGCTTATCTCGACACAGAATGGGGCTGAAAACTCCTCAGTCCAGATGCAGCGCAGGGCGATAAAGGCTCAGAGTGAGACTCTGGACTGGCTCAAAGCTCGTCTCGCTGTGCTGGAGGAGATAAGTCCTGAGAGTGAAGCTCACATGCAGAGAGATGCTCTTGAGAAACTCTCACAGCAGTTTTTTGCAGCGCTGTTGTCTCTATCTGAGGCTGCTGGAGTGGCCAATGAAGCAAGCGTAAAGACTGAAGAGGAGCTGAAAGAGGAGGTAAACGATGACGATCTGATTCAGATCCAGGAGCACAGACAAATACTGAATGCAGAGAGTGCCACTGAAGCCAAACAGCTGCTCCTCATTCACCAGCAAAATCTGAAGACCCAGCAAGGGAAAGATATGGATGTGAGATGTCAAGGTAATTTCTTTAAAGAAGACCGGGCAGCTCAAGAGAAACACCTGCAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0007275 multicellular organism development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0050840 extracellular matrix binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034499 lncRNA upstream 29586 26059710 ~ 26065944 (+) True XLOC_017339
TCONS_00036593 lncRNA upstream 209829 25880309 ~ 25885701 (+) True XLOC_017334
TCONS_00034490 lncRNA upstream 444438 25650477 ~ 25651092 (+) True XLOC_017332
TCONS_00034487 lncRNA upstream 451775 25643044 ~ 25643755 (+) True XLOC_017331
TCONS_00036385 lncRNA upstream 560312 25533077 ~ 25535218 (+) False XLOC_017322
TCONS_00036595 lncRNA downstream 342566 26556387 ~ 26563599 (+) True XLOC_017343
TCONS_00036596 lncRNA downstream 490563 26704384 ~ 26706029 (+) True XLOC_017348
TCONS_00034515 lncRNA downstream 691337 26905158 ~ 26913676 (+) False XLOC_017352
TCONS_00034517 lncRNA downstream 691389 26905210 ~ 26913507 (+) True XLOC_017352
TCONS_00034533 lncRNA downstream 789850 27003671 ~ 27004507 (+) False XLOC_017358
TCONS_00034498 mRNA upstream 70606 26002534 ~ 26024924 (+) True XLOC_017338
TCONS_00034497 mRNA upstream 134153 25936370 ~ 25961377 (+) True XLOC_017337
TCONS_00034496 mRNA upstream 167175 25911342 ~ 25928355 (+) True XLOC_017336
TCONS_00034495 mRNA upstream 184887 25904199 ~ 25910643 (+) True XLOC_017335
TCONS_00034494 mRNA upstream 208299 25879826 ~ 25887231 (+) False XLOC_017334
TCONS_00034501 mRNA downstream 135181 26349002 ~ 26355153 (+) True XLOC_017340
TCONS_00034502 mRNA downstream 180503 26394324 ~ 26407233 (+) True XLOC_017341
TCONS_00034503 mRNA downstream 324316 26538137 ~ 26541177 (+) True XLOC_017342
TCONS_00034504 mRNA downstream 342353 26556174 ~ 26563832 (+) False XLOC_017343
TCONS_00034505 mRNA downstream 342551 26556372 ~ 26560386 (+) False XLOC_017343
TCONS_00034480 other upstream 514074 25580906 ~ 25581456 (+) True XLOC_017327
TCONS_00034475 other upstream 533713 25558878 ~ 25561817 (+) True XLOC_017323
TCONS_00034473 other upstream 540515 25533064 ~ 25555015 (+) False XLOC_017322
TCONS_00034470 other upstream 626381 25466570 ~ 25469149 (+) True XLOC_017320
TCONS_00034463 other upstream 858406 25237009 ~ 25237124 (+) True XLOC_017317
TCONS_00034507 other downstream 380943 26594764 ~ 26594879 (+) True XLOC_017344
TCONS_00034514 other downstream 685924 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034520 other downstream 725937 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other downstream 726312 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034547 other downstream 1124185 27338006 ~ 27338121 (+) True XLOC_017366

Expression Profile

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