RNA id: TCONS_00034497


Basic Information

Item Value
RNA id TCONS_00034497
length 8432
RNA type mRNA
GC content 0.39
exon number 12
gene id XLOC_017337
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25936370 ~ 25961377 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTATTTTTGTAGGATGTGGCAACACTGTTAGCCACCATCACCAACATGTTCAAATTCAGCAAACACGTGGACGGCTGATGTGCTGACAAGCAGTGATGAAATATAAATTTAGGCAAATTAATATAGTatttattacaaattacaaattaagTTAGTATTACGCTACGATTCATGACAAGATGCTTCCAGCTAGCTGCTCCGAGTAAACAGTTTAAACAGCAATCCTGTCACGAGCATTACTTTGTTTGTTTCCTGACCTAAAGCAGCAATGAAAGCCAAACCAAACCAAGCCAAAGCCAAAACGAAGATAAAGAAAAAGCGCAATCATGCTAACGTTAACCACAATATCGGGAAAAATTACAGGAGATGTTTGATTTGTGGTAAGCAGTACGGAGAAAAGAATTTGACCAGTCATATACATTCTTATGTGCACCATGAGGCAATCGAGCATATCAAGAGGAGTAAACAGTTGCATAACTGTTTTGCTTGTAATGTGTCTTTGATGGGACTTGAGATGTATAAGGAGCATATTTCAACCCCTGAGCACACACATGGGTTGTTTCTTCTCCACACTAAAGGGAAACAAAAGGAACTTCGAGAGGACTGCGATATTGCCCTTACTAAAAATGAACTCAGAGCCCTTAAAATACAGCAACAAAGGAAGCAACAACACAAAGATTGCAGCACTTGTTGCATATGCTGTAAGAGTTTCCCTGTACAGGATATCGATGTACATATGCACAGTGGTTCACACCATCAGAGGATTGAGCAGCTGAAAGGCAGACCACAAGTGCATAAGTGCAGGGCTTGTGAGTTGTCATATGCATGTTTGGCAGAGTTTAACCTGCATACCCAAACTATTGAACACCAATACATGATGTTTCAACTCAAGAAGAATACGGCTGATGGACAGTTTGTGGACTACAGTGCTGATATGGACGATGAACTCAGAAACCTTTGCTTCCAAAGGAGGAATATGGAGAAAAGAAAATGTTGGGGTAAAGGGACACAGGCAAAAACCTCATATAATAGCACATATTGGTCAACACCAGTAGCTGTGAGTAAAGAGTTTACAAATGCAAACAATCAAAATGACCATCCAGCATCTATGCAGCTTACCCAAATCCTGTCTAAATGGAGACAAGAATGCATGCCTGGTATAGACAACTCAAATGGGCCACTTGAGAAACCATCAGAGCATCATCCTCAAGAAGTGTCTGCTCACACTACACTTCCAAACCCTGAAAAAAAAGGAGGTGATGTGTATGAAGTGACTCCAGAAACTGTAGGTGGTGCTTGTGTTGAGCCTTCCTGTTCCCCTGCATTGGTCCAAAGTAGAGTGGATGCTCACAGATACAACCTGACCATAACAGCAAGACAAGATTGTACAGATCAGAAGAAAACAAATGTGCATGAAGCTGTTCTCCAAAATCCACAAGAAAAAGcaataaatgcagtttttcagCCCATGGCAAGAAAAGACATGAGTGAAGTACAGCCATACTCTGATTCTCTTCCATCTGTTTCTTCACTGCCTGAGACGACGCTTGAAAGCCAAACTTCAAAAAATGATGGCCAGGTATTGGAGACTGCTGAAAATGTTCAGTGTCATGCTGTTTATATGAAGAGAAAGAAATCaaatgaaagtgaaaaagaaCAGAGTGAGACGTCTCCAGAGAATTACAACATCCAGACAACCAAGAAAAGAAAACAGGACATTTCTCATAATGTGAATAATCCGAATCCAGAGAGAAATAGCCAAATATTCAAAAAAGGCAATGTGAATAAGTTGTTGGTGCTGTCTTTGAAAGAAGACGAGTTGACTCGCTCTTTGGAGAATGTAGGCGACCAGCTGATCCAGGCACAATCCATTTTACAGAGCACATACACAGAAGTTCAGCGTCTGCTAGCTGTTAAACAACAGGTAACCTCAGAGATGGCCTCACTCAGGGAAAAGCGCATAAAGATACTACAGCAAATGAAGAATACCAGTTAGGGTTCCAGTCCTCCAGACCAGCAGATGGCACTACAGGACCTACATCTCACAACACTGACTGGTCTCCATGATCTCCCCTCAGAGCAAAGAATGCATAAGTTTGATAGCTGTTCACATATAATTTTGCACTAATTTACTCCAATCGATGCTGATTATTCctagaaatgacatttttgaataGCTATAGCACTTTAGAATCTAGGAATGACCTTTTTTGTAtatagttttgagaaataatatatattttgttaagaTTATCTGCCGAATTATGTCAAGCTATGAGAGCATGTTTGTGCTCCTAAGCAGAGCTGTTACATGTCTTAAGATTAAGGTCAGTTTCAAAATAGCATCATAATAGCAAATCTTTAATAATAGCATAAGCTGaatatgtttgtttattgttcAATATAGTAATTTTCTTAGGAATCTGAAAACAGCTAGAAATATTCTGGTTGTTTTTATGTGTGATTTTGCTACTCTAGCACAAGACGCTTTGTTTACACTTAAGGTAAATCATGTGTTTATCCATTGTTTGCAATCATGAGCACATTTTTTTGCACTATTTTGAGCTGTATGTTTATGCTCAGCAATACATACTAAGAGCAACTAGTGGAATAGAATGGTGAAACACTTTATTCAGTTTATTAATTTACAGTTGCCCAGAAGCACACACAGTTTACAAGAATGATGTGTTTAGATGTGTCAACATTTTACTTTAAAGGGGCAATCTGAATGAGGCATCATGGTCCATTCAGTTACTCAAAATCAAATTGGTTTGTACTTGACCAGCATTTGTGGAAGAATTATTTTGATTCAGGCgtagctctttgtctgcactgcTCCACTTAATGGATGCACACAATATGTAATTTCTACCAACTTCAGTGTTGCCAGGCTGACTTCTGTTTTTATGTCTTTAGGCGTACATTGTCAGTTGAAGCCACTGCGCAAATAAAACAGAAAGCAAGAACTTGTTAGAGTGATAAATAGCAAAGattataaagaataataaaaatctaaataattagtATGCTTCTACTCATTCTGAAGATGCGGCTTACCTCAAAAACATTGAGCTTGATAAGTCCATCACCATCCTTGTCAAAGGCTCTGAACGCCCCTGTTGGAGAATCTCTTTTACTACAGGTGTCCGATAGCAATAATGCATCTCAAAAGGCTGGTTGTTTAATGCAGACTAAATTCAGATTATACTACATTTTTGGAAGTTAAGATAGCCAATGTTGCAGATTTTGACTCCTGTACACTTGTGCCAAAGACAAATAACATGACAGGCTACACACTAGTTTCTGACAAATCATCTTGTCACAGTGAAAGCAGCCTTGAAATGTGCCAAGATAAAAGCAACATGTAGATTATTTTTAttagctcatttatttatttttgaaattaatatttgtacattttattagtttttattttagattatatgcaattttcacattaaaataaagtgaaatatttatttttttggtcagaaTAGGCTCACCTTGAggtgttaaaaagaaaatgtttttgtaattttgcttAACAAAACCTCACtgtataaacattaaaaaaagcatttggattctcatgtcttttttttaaagacaatttcTTGAAGCGATATTcaaaatcatttactcacactttacttaTTCcaactttattctgttgaacacaatggagGATAGTTTAAAGAAGACTGAAAATGTAATCATgggcttccatagtatttgtttttcctatggatgtcaatggttacaggttttcagctttcttcaaattatattcttttgtgttgaacagaacaaGGTTGATAACCACTTgagagtgtgtaaatgtgagcaatttttcatttttggttgaattaCCCCTTTAATTCACTGTCATGCAATATATAGACCAAAAAGTCATATATCTAAAGACTCCTTAAGTCAAATGTGCTAAAATTGGGATGATACTATGTTGACCAAATCCAGGaagagtgaaataaaaaaaataaataaataaaacttactaAACATTCCCTCCAGTCGCACTAAGCAGCTAATGTAGCTGTCGAAATCCAACTCCATGTGTTCATTGGCATATCTCATACAAATGATGTCATACAGCTGATTGTTGAGTTGAAAACCTGATGCGCAGAGACAAATCTCAGTGTTACAAAAGGCTAcaaaaaatgatttgttaaatAAAGACTGATTGTCCAACCTGCTTCAGTAAGTGCGTTCCTCATCTCGAAACTGCTGATTGTGCTGGATTTGTCAGTGTCGAAACGTGTGAACACCAGCTGTAAATCAGAAATGGAGCATGTCTATAACATGTTCTACTAACTACTAACAGTGTAGTGTAACCTGCTGATCTAACGAGAAAATAACATAGATTCATACCTTCCACTGTTTAATCTTGTTCCATAAGTGTTTGAACTCCTGCAGGTTTAGATGACCTGTTCCATCAGTCTAAAGTGTTGTAGTTGAGATACATTTCAGTGCGTTTGTGTAGCTGGTTGGAAAACTGACCAACTTTGAAAAAGGTAATTGACAATTCATCCAGGCCACAAGAGACCACTTTTTCAGTCTCTTTTTATTAAGACCAAAATACccacacccatccatccatccattctgaCAAAAAAAGTTTTCATATTGATTAGaatagaaaaagaaaaggaaataatgcAGTTGTCTTTTGCGGAGTGCACCACACCAATCAGTGTGTCAGAAAGGTCTAAGTCGCCAGACTCAAGGTGAATCAACCTTCTCAAAGAATGGGGATTCTGGTCTCCAGATGGAGGCATGGGTTCacatcccacttctgacaatagAGTTTTCCTATTGATTAGAAGAGGgaaaagaaatggaaataatACTGTTGTCCTTTGCAGGTTGCCTCAACAGATTATTTGTGAATTGCACCACACTGTAGCAAAAAAATGTGTGTCCGAGTGGTCTAAGGTGCTAGGCTCACAGTCATTCAACCTTCCCAGCTAATGAGAAATCTGGGCTTCAGATGGAAGCgtaggttcaaatcccacttctgaccatagatatttcagatttattaGATAAGATAAAGCAAGGAAGATGATCTACaggtttatattgatggttttgcACTTTGAACTTTACCTTAATGGAAGAAATAGTAATGGAGTGCACTATACCATAGAAAAAATGGTGTTAGaatggccgaggggtctaaggcgccagactcaagatgAGTTAATCTCCTCAAGGAATGAGGTTTCTGGTCCCCTGATGGAGGCGTGGGTtaaaatcccacttctgacaatagATTCATTAGATTTCAAAAAGAAGTGGTGATGATTTAAGGTTTTTTATTGCTGGTGTTAGGCTCTGAACTTAGCCTCAACGGAGGCATTAGTAATGGAGTGCACTATACTGCAAAACAGACatgtgtcagaatggccgagtggtctaaggcgccagactcaagatgAATCCATCTTCTCAAGAAATGAGGATTCTGGTCTCCAGATGGAGGCGGTGGTTCAAATCACACTTCTGACAATGGAGTTTTCCTATTGATTAGAAGGAAAGAAATGGAAATAGTTCAAAGGTTTCTGATGTTGCAGCTGTCAGTTGCAGTTTGCCTCAGTAGAGTCTTTATTTGTAGATTGCACCACACCTTTGCAAAAtgtgtgtcagaatggccgagtggtctaaggtgcCAGACTAAAGGTGAATCAACTTTCTCAGTTAATGAGAATTCTGATCTCCCGATGGCGGTGTGGGTTCAAATCCAACTTCTGACAATAGAAATAttagatttattatattataaaaagaaATGTAGATGATTTACAGGTTTTATTGCTGTTGTTACTCTCTGAACTTTGTCTCAATGGAGGCATTAGCAATGGAGTGCACAATACCACAAATAAGGATGTGTCAGAATGGcagagtggtctaaggcgctagAATCAAGGTTAATTATTCTTCTCAAGGTATGATGATTCTAGTCTGTAGATGGAGGTGTGGGTTCAAATTCCACTTCTGACAATAGAGTTTTCCTATTAATTAGAAGAGaaaaagaaatggaaataatACTGCTGTCCTTTGCAGGTTGCCTCAACAGATTCTTTATTTGTGGATTGCACCACACTGTAGCAAAAAAATGTGTGTCCGAGTGATCTAAGGTGCTAGGCTCACAGTCAATCAACCTTCTCAGCTAATGAGAAAATCTGGGCTTCAGATGGAAGCGTAGGTttaaatcccacttctgaccatagatatttcagatttattaGATTAGAAAAAGCAATGAAGATGATCTACAGGTTTTTATTGCTGGTTTTGCGCTCTGAACTCTGCCTCAATGGAGGCATTAGTAATGTACTGCAATGTACTATTGAAATACATGTGTCATAATGGCCGtgtggtctaaggcgccagactcaagatgAATAAATCTTTTCAAGGAATGAGGATTATGGTCTCCAGATGGAGGCgtaggttcaaatcccacttctgacaacagCGTTTTCCTATTGATTAGAAGAGGgaaaagaaatggaaataatACTGTTGTCCTTTGCAGGTTGCCTCAACAGATTCTTTATTTGTGGATTGCACCACACTGTAGCAAAAAATGTGTGTCCGAGTGATCTAAGGTGCTAGGCTCACAGTCATTCAACCTTCTCATCTAATGAGAAATCTGGGCTTCAGATGGAAGCgtaggttcaaatcccacttctgaccatagatatttcagatttattaGATTAGATAAAGCAATGAAGATGATCTACAGGTTTTTATTGCTGGTTTTGCGCTCTCAACTTTGCCTCAATGGGGGCATTAGTAATGTAATGCACTGTACAATTGAAATGCatgtgtcagaatggccgagtggtctaaggcgccagactcaagatgAATCAATCTTCTCAAAGAATGAGGGTTCTGGTCTCCAGATGGGGGTGTGGGTTCAAATCCAACTTTTGACAATGTAGTTTTCCTATTGATTAGAAGGGaaaaagaaatggaaataatTCAAAGTTTTCTGATGTTGCAGTTGTCTGTTGCTGTATACCTGAGTAGAGTCTTTATTTGTAGATTGCTCCACACCTTTGGAAAATAtctgtcagaatggccgagtggtctaaggcgccagactcaaggtgaATCAAATTTCTCAGTTTATGAGGATTCTGGTCTCCCGATGGAGGCGTGGGTttaaatcccacttctgacaatagAAATATTAGATTTTTACATTACGAAAAGAAACGTAGATGATTTACAGGTTATTATTGCTGGTGTTACTCTCTGAACTTTGCCTCAATGGAGGCATTAGTAATGGAGTGCACTATACCACACAAAAGTCAGCTCTCAGAATGGCTGAGTGGTCTAAGGTGCAACACTCAAGTTTAATCAATCTTCTCAACGTATGAGGGTTCTAGTCTCCAGATGGAGGCGTGGTTTCGAATCCCATTTCTGACAGCATCGTTATCCTATTGATTAGAAGAGGgaaaagaaatggaaataatACTGTTATCCTTTGCAGGTTGCCTCAACAGAATCTTTATTTGTGGATTGCACCACACTGTAGCAAAAAATGTGTGTCTGACTGGTCTAAGGTGCTAGGCTCACAGTCATTCAACCTTCCCAGCTAATGAGAAATCTGAGCTTCAGATGGAAGCgtaggttcaaatcccacttctgaccatagatatttcagatttattaGATAAGATAAAGCAATGAAGATGAACTACAGGTTTTTATTGCTGGTTTTGCGCTCTGAACTTTGCCTCAATGGGAGCATTAGTAATTTAGTGCACTGTACCATTGAAATGTatgtgtcagaatggccgagtggtctaaggcgccagactcaagatgAATCAATCTTCTCAAGGAATGAGGATTCTGGTCTCCagatggaggcgtgggttcaaatcccacttctgaaaACAGCATTTTCCTATTGATTAGAAGAGGGAAAACAAATGGAAATAATACTGTTATCCTTTGCAGGTTGCCTCAACAGAATCTTTATTTGTGGATTGCACCACACTGTAGCAAAAAATGTGTGTCCGAGTGGTCTAAGGTGCTAGGCTCACAGTCAATCAACCTTCTCGGCTAATGAGAATTCTGGGCTTCAGATGGAAGCgtaggttcaaatcccacttctgaccatagatatttcagatttattaGATTAGATAAAGCAACGAAGATGATCTACAGGTTTTTATTGCTGGTTTTGCGCTCTCAACTTTGCCTCAATGGAGGCACTAGTAATGTAGTGCACTGTACCGTTGAAATGGACGTGTCacaatggccgagtggtctaaggtgcCAGACTCAAGATGAATCAATCTTCTCAAGGTATGAGGATTCTGGTCGCCAGATGGAGGCGttggttcaaatcccacttctgacaatggAGTTTTCCTATTGATT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-24 Predicted to enable RNA binding activity. Orthologous to human ZNF106 (zinc finger protein 106).

Ensembl:

ensembl_id ENSDART00000141265

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036593 lncRNA upstream 50669 25880309 ~ 25885701 (+) True XLOC_017334
TCONS_00034490 lncRNA upstream 285278 25650477 ~ 25651092 (+) True XLOC_017332
TCONS_00034487 lncRNA upstream 292615 25643044 ~ 25643755 (+) True XLOC_017331
TCONS_00036385 lncRNA upstream 401152 25533077 ~ 25535218 (+) False XLOC_017322
TCONS_00034468 lncRNA upstream 583921 25351577 ~ 25352449 (+) True XLOC_017319
TCONS_00034499 lncRNA downstream 98333 26059710 ~ 26065944 (+) True XLOC_017339
TCONS_00036594 lncRNA downstream 134153 26095530 ~ 26213821 (+) False XLOC_017340
TCONS_00036595 lncRNA downstream 595010 26556387 ~ 26563599 (+) True XLOC_017343
TCONS_00036596 lncRNA downstream 743007 26704384 ~ 26706029 (+) True XLOC_017348
TCONS_00034515 lncRNA downstream 943781 26905158 ~ 26913676 (+) False XLOC_017352
TCONS_00034496 mRNA upstream 8015 25911342 ~ 25928355 (+) True XLOC_017336
TCONS_00034495 mRNA upstream 25727 25904199 ~ 25910643 (+) True XLOC_017335
TCONS_00034494 mRNA upstream 49139 25879826 ~ 25887231 (+) False XLOC_017334
TCONS_00034491 mRNA upstream 201055 25711718 ~ 25735315 (+) False XLOC_017333
TCONS_00034498 mRNA downstream 41157 26002534 ~ 26024924 (+) True XLOC_017338
TCONS_00034500 mRNA downstream 134153 26095530 ~ 26359434 (+) False XLOC_017340
TCONS_00034501 mRNA downstream 387625 26349002 ~ 26355153 (+) True XLOC_017340
TCONS_00034502 mRNA downstream 432947 26394324 ~ 26407233 (+) True XLOC_017341
TCONS_00034503 mRNA downstream 576760 26538137 ~ 26541177 (+) True XLOC_017342
TCONS_00034480 other upstream 354914 25580906 ~ 25581456 (+) True XLOC_017327
TCONS_00034475 other upstream 374553 25558878 ~ 25561817 (+) True XLOC_017323
TCONS_00034473 other upstream 381355 25533064 ~ 25555015 (+) False XLOC_017322
TCONS_00034470 other upstream 467221 25466570 ~ 25469149 (+) True XLOC_017320
TCONS_00034463 other upstream 699246 25237009 ~ 25237124 (+) True XLOC_017317
TCONS_00034507 other downstream 633387 26594764 ~ 26594879 (+) True XLOC_017344
TCONS_00034514 other downstream 938368 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034520 other downstream 978381 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other downstream 978756 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034547 other downstream 1376629 27338006 ~ 27338121 (+) True XLOC_017366

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_04819341_04824750.mRNA True 1634 mRNA 0.44 11 CI01000325 4819262 ~ 4824874 (+)