RNA id: TCONS_00034502


Basic Information

Item Value
RNA id TCONS_00034502
length 3863
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_017341
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26394324 ~ 26407233 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGTCTGTCAACTGAAATGCAAATCGCCCTGCTGCGTGTATCTGTCTCGATACGTTATCTTCATGTGGGGGTGGGTAGCGTGACCTACGGCTATCCAACTCCACGAAAATCCGTTTATGTGTAACGTTCACCAACGATCGGCGCCCTGAACGAATGCTCAACATTCATCTCCGCCGCACCGTGAACACATGAGTACGAACGACACCCGTAACGTTCACCAGCGCACTGTTTGGCGGCTCTCAGCGCCAAAGACCGTTTGTTTTGGCATCCCAGGGAAGTGGGTTTTACAACCGCTGTTTTTAAGCCCTTTTAGACAGTCATGTGATTGTAACGTAACCCGACCGGAAAACACCGACGACCATCGCCGCCAATGCTGCGTTTGAGAGGAACAGAGCAGCTGCGAGCCCAACGGACAAGTCCTCCGGTAACAGACAGCAACTCGCCGAACTCCACACGCCCGAGCGGAGGAAAGGTGGAAGTATGGAGCTGGCCAATCATGGTCTTATCCTTCTGCAGCAGCTCAACGCGCAGAGGGAGTTCGGCTTCCTGTGTGACTGCACGGTCGCAATCGGCGATGTCTTTTTTAAAGCACACAAGGCCGTTCTGGCAGCATTCTCCAACTACTTCAGAATGCTATTCATACACCAGGACAGTGACTGTGTTCGCTTAAAGCCTGCTGACATTCAGCCGGACATCTTCAGCTACCTCCTCAACCTGATGTACACCGGCAAATTGGCGACACAGCTCATTGACCCAGCCCGCCTGGAGCAGGGGGTCAAGTTCCTTCACGCGTACCCTCTCATCCAGGAGGCAACACTGGCTAGCCATGCGCCTCAAGCACACCCTGAGGTCAATCTCCCTCTGTCATCCTCTCTTTATGGCATTCAGATATCAGACCAACAGGCCACACTCACAAACCGGCTCTCAGCGAGAACACCTCTATCCTCACCATTCGACTTAGAAGGAACCGGTTTGCTGGATGGGAAGTCCTCTGCGGCAAGCAAAGCTACCTCACTGACACGGTCTGGAACCAAACACAGGCACGCTCCATCAGAACCAGAGGTAGAAGCGTCTGCGAGTATCAGCCAGTTTCTGAGGGAAAGTGCCGAGCCGGAAACATCTGCAACTGAAGCGCCGTCTTGTTCTCTGAGCGCTAACACAATTCTACACGTGAAGCCCAGCATCATGAGAAGAACTTCCTCTCTGAGAAAGCATTACACGTGTCATGTTTGTGGAGGCCGCTTCACTCAGCGCGGAGCCTTACGAGAGCATCTGCTCCTGCACACTCAGGCTATGCTTCCCCTGGTGTTGGAGTCTGTCGGCGCCACTTCCCCTATGCTAAGCGGTGGTGCCGCTACGCCCGAGGTGGAGGAAGTTCTCCGAGGCAGTGAAGCTGCTGCTGCCACTCCAATAATCGTGGATGTCCCAAGTGACAGTGAACAGCATTCATACTCAAAAGACTCACCGCATCCTGAAACTGCCATACCTGTCCCGACAACAACTGCGGTCAGTCTGTGCACTGCACAGCCTCAAGCAGACACACCGCCTCCATCTGATATCGCTGATATTGACAACCTAGAGGGTGCGGCCGACATGGAGCGGGAAGTGAAGCGGAGGAAATATGAGTGCTCGACTTGTGGCCGCAAGTTCATCCAGAAGAGCCACTGGAGGGAGCACATGTACATTCATACGGGCAAGCCGTACCGCTGCAGCGCCTGTGGCAAGAGCTTCTGCCGAGCCAATCAGGCGGCGCGGCACGTCTGCATGAATCTGGGCTCAGAGCCAGCCTACACCATGGTGGACCGGCAGAGCATGGAGCTGTGCGCGGCGGATGACTCCAGCCAGATGGAAGCGATGTTCCTCGGCTCGTCGGGGAGACCGTACAAATGCAATGTGTGTGAAATGACCTTCTCCAGCCCTAATGAGGTGATCAAGCACCTGTGCTTCAACCAGGGGGCGCTCTCTGGTGGAGCGGCTGGAGAAATGGGCGTCAGTGGGATGAACAGTGACAGCCTGGCCAAAGATGAAGGCTCTGATTCATCCAATGGTGGGCCGCTGATGACACCCATCAAAACTGAGGAGGTGTTTGTGGAATAGCTTCACACAAACGTCACTGCGAagtgttgcttttttttaaatgcgttgCATATGAATTATGGGTAAATTATGAAAAGATGTTAAGCTACAGATGGAAGTTTctgttatattgttgttgttgttttcttctaCTGAAATCTGCATTCTGCTTTATGCTTTTATAACATTCAGATTTGGTTGGTATATTTATAACCGATTTCTAGTACATTTAGTTCAACAAGTCAAACTCCTGCTTCATTCTGTTTCTTTGAAGGGTTTTATTGGTTACTTGGGTCATTTAGCGTTTTGGTTGTGGTTAAAGGTCTTCCTCTGTCTAACCGTCTACAGGAAGAGGATGTTGTGAACTGCTGGAATCCTGCAATCATCTCAGTGAAGATCAGACTTCTCGTTAGATTTGCTCTAAAGAGTATTTATAATAAAAGCAAAACCTTACACCAACACTTCTTTTGTGGAAATTGATGCTATTTTGTGAGCAGCTAGGTGTGGGTTTTGAGTAAAAGATGAGCATTCTCTACCTCAACTGGCTTTAGACATGCAATACAAGACCAACCTGAAATTTGCATCAAAGGGTCGAGGATCAAAGTCTACTTTATCTTCCAGTGCCTCCGAGTAGTTTTTCTTTCTGACGCTGTTGCTAATTTCTCATTACATGCTCTGGGCTCACAAGAGCAAGGTGTAATTTTAGATAACGTTCATGATGCTCAACAGGGATGATCAATCTGGCCTTGCGTTTATGTTAGCGTCAATGTGAAGTAGGATATATTTGCCTAATCATCCACTTttcgtttttttttacagtacttttttgTGCCAATAAACCCCGCCTAAAGATAAACATCCATGCTGTAGAATTGGTCAGCGGATCGTCGATCTGTTTGCGTTTCTCTCACTGTGGTTAAGCATGTTTACAGTCgtgctgtgtgtgtttaatcaacttattattactgtgtgtgtgtgaatttagcAAACACTGTGGCCAATCCTACACCTGTACGTAACGTTGATTGAAGGGAGAGATTCCTGTCACTGATTTCATTTCGCAACGAGATGATTTGCTTGAATATGCTCTTAAATGGCTTATATTTGAGTTTTATGAAACTTTTCTAAGTTTGTGTACAGTGCTTTATTCACAAAGAATTTTATAATCTCAAAGGTTGTATATTGTTTGACGCATTTACTGTAGAATATTATCCATTTTAGTGTAGTCTACATTTGGTTGTATTTCTGTTGTAACGAGACTGTCAGCGAGTTAAAGCACTGAAACATCCCTGACTACTCCACAGTTCTGCTTGTGCTACATCAGGaaacttcttttattttaatCCAGGTCCATTTACGCTCAGATTTCTTCATCTTTCTCTTTATAAGAGCACAGTGATTTCTGTTACTACTGAATAGCTCGTTAGACCACAGGAATAACCGTTGGCTTCATTTTGTTACATGTAGGGTTTTTCGTTTGTAATTGTGATGTTAATTTGGACGAGGTTTTATGTTCAATTGGTGTAAACATATACATGCAGTCTCATGCCTTTTTTGTGTAGTATTGTTGTGTCTTCATTATTTGTACATATGCAAGCTGTTACTCTTTCAGCAGTTGTAGGGAAGGTTTGAGGGTGAAGGTTCTTCCTCAAACGCACAAACCCCAAAGCCAAGGCTGTGATCTCTCGCTCCTCAGGAACATGAACTGTCATCTCTGGAAAAAGAAAAATTCCTCATTTGCGTTTTCATTgtgaataatgataataaatccTTATGTTTTTGAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2753 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; optic tectum; vasculature; and ventral mesoderm. Orthologous to human ZBTB2 (zinc finger and BTB domain containing 2).

Ensembl:

ensembl_id ENSDART00000078093

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036594 lncRNA upstream 180503 26095530 ~ 26213821 (+) False XLOC_017340
TCONS_00034499 lncRNA upstream 328380 26059710 ~ 26065944 (+) True XLOC_017339
TCONS_00036593 lncRNA upstream 508623 25880309 ~ 25885701 (+) True XLOC_017334
TCONS_00034490 lncRNA upstream 743232 25650477 ~ 25651092 (+) True XLOC_017332
TCONS_00034487 lncRNA upstream 750569 25643044 ~ 25643755 (+) True XLOC_017331
TCONS_00036595 lncRNA downstream 149154 26556387 ~ 26563599 (+) True XLOC_017343
TCONS_00036596 lncRNA downstream 297151 26704384 ~ 26706029 (+) True XLOC_017348
TCONS_00034515 lncRNA downstream 497925 26905158 ~ 26913676 (+) False XLOC_017352
TCONS_00034517 lncRNA downstream 497977 26905210 ~ 26913507 (+) True XLOC_017352
TCONS_00034533 lncRNA downstream 596438 27003671 ~ 27004507 (+) False XLOC_017358
TCONS_00034500 mRNA upstream 34890 26095530 ~ 26359434 (+) False XLOC_017340
TCONS_00034501 mRNA upstream 39171 26349002 ~ 26355153 (+) True XLOC_017340
TCONS_00034498 mRNA upstream 369400 26002534 ~ 26024924 (+) True XLOC_017338
TCONS_00034497 mRNA upstream 432947 25936370 ~ 25961377 (+) True XLOC_017337
TCONS_00034496 mRNA upstream 465969 25911342 ~ 25928355 (+) True XLOC_017336
TCONS_00034503 mRNA downstream 130904 26538137 ~ 26541177 (+) True XLOC_017342
TCONS_00034504 mRNA downstream 148941 26556174 ~ 26563832 (+) False XLOC_017343
TCONS_00034505 mRNA downstream 149139 26556372 ~ 26560386 (+) False XLOC_017343
TCONS_00034506 mRNA downstream 149139 26556372 ~ 26563611 (+) False XLOC_017343
TCONS_00034508 mRNA downstream 276700 26683933 ~ 26685395 (+) True XLOC_017345
TCONS_00034480 other upstream 812868 25580906 ~ 25581456 (+) True XLOC_017327
TCONS_00034475 other upstream 832507 25558878 ~ 25561817 (+) True XLOC_017323
TCONS_00034473 other upstream 839309 25533064 ~ 25555015 (+) False XLOC_017322
TCONS_00034470 other upstream 925175 25466570 ~ 25469149 (+) True XLOC_017320
TCONS_00034463 other upstream 1157200 25237009 ~ 25237124 (+) True XLOC_017317
TCONS_00034507 other downstream 187531 26594764 ~ 26594879 (+) True XLOC_017344
TCONS_00034514 other downstream 492512 26899745 ~ 26902268 (+) True XLOC_017351
TCONS_00034520 other downstream 532525 26939758 ~ 26943286 (+) False XLOC_017354
TCONS_00034523 other downstream 532900 26940133 ~ 26940555 (+) False XLOC_017354
TCONS_00034547 other downstream 930773 27338006 ~ 27338121 (+) True XLOC_017366

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_05073342_05079748.mRNA True 2227 mRNA 0.50 3 CI01000325 5073342 ~ 5080187 (+)
bowfin (Amia calva) AMCG00003910 True 4234 mRNA 0.41 3 CM030121.1 24118384 ~ 24129186 (+)