XLOC_017672


Basic Information

Item Value
gene id XLOC_017672
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 47988451 ~ 48034675 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036703
gccaactaatccaggatttggtttacacagcggatgcccttcctgttTTGGAAACCACACCGTTCAAataTAAATGTGCAATTCCGCCATCAGCCAGCAGAGGCAGACAACGAGACACTACAGATATTCATCTCACACCTGAGACTGTGAGTAAAGCTAAACTACATGATGTTTTAACACGGCAGACACGACAACAAATTCAAACTCGTGTTCAGATGTGTTTTATTGTACTGTTACTTCGTTCGCACTTCCCTTCAGAGATAAAACATCTGCATAAACGTGGAGGTAGAAACTGATTTTCCGTCAGGAGATACACTtcactctcacacaaacactgTATGGGCGAATGAATCTCGTGTTAAGAAACATGCTCAGGATATATTTCAACCCCAATTCAAACAAAATACTGTcataatttttaaacaaaagcaTCCCAAGTCTTTAATTGTGTATGTAAAATATAAAGGTATGCCTAAAGAATAACATACGACGGTTTACGCTAATAATAGATGCACATTGTCATACTTGGTAATGAGAATCATCATTGaggttaataataaacatttccgGACACATTACAGTACTAAGAaataaaggtaacactttataataaggctTCATTAGGTAAAGCATCTGATAGCatgataaacaatacatttattagggtatttattcaaaattgttaacaataatgaaaatacagcaattcgctgttagttcttgttaactcacagtgcaataACTAAAGTTAAGAAGCATttaaatgcattagtaaatgtttaactatgattaaaaaaacacaatacaagTATTATTCGATCCTAACTCATgctagtaaatatattaactaatgaaaccttgtaaagtatgaacaaaataaaaaccaattctGCATCACTTGACCACTTGCTTAAATATAT
>TCONS_00036704
GCAGTAAAATATAACCAGGAGATGTTCCTGACAGGTTTCATGAGATCCACTGAAGTACCAGTTTGACAAGTGAGCAAATCAGataTAAATGTGCAATTCCGCCATCAGCCAGCAGAGGCAGACAACGAGACACTACAGATATTCATCTCACACCTGAGACTGTGAGTAAAGCTAAACTACATGATGTTTTAACACGGCAGACACGACAACAAATTCAAACTCGTGTTCAGATGTGTTTTATTGTACTGTTACTTCGTTCGCACTTCCCTTCAGAGATAAAACATCTGCATAAACGTGGAGGTAGAAACTGATTTTCCGTCAGGAGATACACTtcactctcacacaaacactgTATGGGCGAATGAATCTCGTGTTAAGAAACATGCTCAGGATATATTTCAACCCCAATTCAAACAAAATACTGTcataatttttaaacaaaagcaTCCCAAGTCTTTAATTGTGTATGTAAAATATAAAGGTATGCCTAAAGAATAACATACGACGGTTTACGCTAATAATAGATGCACATTGTCATACTTGGTAATGAGAATCATCATTGaggttaataataaacatttccgGACACATTACAGTACTAAGAaataaaggtaacactttataataaggctTCATTAGGTAAAGCATCTGATAGCatgataaacaatacatttattagggtatttattcaaaattgttaacaataatgaaaatacagcaattcgctgttagttcttgttaactcacagtgcaataACTAAAGTTAAGAAGCATttaaatgcattagtaaatgtttaactatgattaaaaaaacacaatacaagTATTATTCGATCCTAACTCATgctagtaaatatattaactaatgaaaccttgtaaagtatgaacaaaataaaaaccaattctGCATCACTTGACCACTTGCTTAAATATAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036703 False 920 lncRNA 0.34 2 47988451 48034675
TCONS_00036704 True 935 lncRNA 0.33 2 47991270 48034675

Neighbor

gene id symbol gene type direction distance location
XLOC_017670 hadhaa coding upstream 3556 47953047 ~ 47984895 (+)
XLOC_017671 CU138532.1 coding upstream 6180 47982137 ~ 47982271 (+)
XLOC_017669 BX005121.1 coding upstream 228543 47759786 ~ 47759908 (+)
XLOC_017668 NA coding upstream 275863 47555700 ~ 47712588 (+)
XLOC_017667 NA coding upstream 443899 47534028 ~ 47544552 (+)
XLOC_017673 NA coding downstream 27071 48061746 ~ 48068088 (+)
XLOC_017674 NA coding downstream 37710 48072385 ~ 48083397 (+)
XLOC_017675 xkr5a coding downstream 65586 48100261 ~ 48105263 (+)
XLOC_017676 tram2 coding downstream 81801 48116476 ~ 48139941 (+)
XLOC_017677 CABZ01059119.1 coding downstream 379037 48413712 ~ 48447840 (+)
XLOC_017664 CABZ01076801.1 non-coding upstream 581187 47407150 ~ 47407264 (+)
XLOC_017678 NA non-coding downstream 461865 48496540 ~ 48499747 (+)
XLOC_017679 NA non-coding downstream 467753 48502428 ~ 48517458 (+)
XLOC_017681 NA non-coding downstream 533579 48568254 ~ 48569823 (+)

Expression


Co-expression Network