XLOC_017675 (xkr5a)


Basic Information

Item Value
gene id XLOC_017675
gene name xkr5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 48100261 ~ 48105263 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035015
TTTCTGTCTGCAGTGGCTCTGTGCAGTGGTGTGTGTCTGCTGTCTCTGTCGTGGGCGCTGGTGCTCTACAGTCGGGCCTGTTGTCTGATTCGTCCTGGGCATTTGCAGATGCCGCCGGCGGCTCTCCTCAGCCAGCTGCTGTGGAGAACGGGCATGTTAGCGGCCCGCTTCACCAGCCTCGCCCTGTTCACCCGCACCTTCGGCTGCTGGCTCATCGGGGTCATCGCGTCTCATTGGCTGATGGCAGCGCTGTGGTTGGTCTCCCAACAGACGGACATATATGTAGGCCAATGGTCATGGCGGGTGTTTAACTTCATTCTGGGAGGCGTTCATGTGTTTCTGTTCCTCAATGTGAAGGACGGTCCGTCCCGCTTCCGGATGGCAGGATTCTACACGGTGATGCTGTTGGAAAATGCTACACTGCtattggctgcgtctgaaattcTGATtgatgcatcatgggatagccTGACCATCCCCACTGCTGTCCTGTGCAGCTTCCTGCTTGgTCTGACGTCTCTAATATTATACTACCGCTTCCTGCATCCCAAGTCCACTGAAATCTCTCAGGGTCTGCATCAGCGCGCGCACATGGGCCGCGAGTGTCTCCAGCAGGCCGACTCCTCCTTCTCTCTGGGAGACAAACATCTTCCTCCGGCAGCTCTTCCGGTCCTCTTCCGTTCCTCCCACCCTTCCTTCTCTCTCTCCGGGATCCCAGGATCACTTCTGGAGCATCCCGGCAGCTGCGGCGTCAAGCCAGACGGAGAGTGTCGGCACCATCACTGGCTGCTCATCCGTCTGGCATTAAAAACAGGAGACCCGGTGAAAATCAACAGCGCTTACGGGGCAGGAGGAGTGTCTGGGATATTAGCGGTGGATCAGAAAGCGGAAATGATTGACGATGGGTGCATTTCCGCATCCGAGAGCCGGGACGATACGATGGCGCCGCTGTCCGACTGCAGGGAAGAGTTCGAGAGCATGAGCGAAGCTAAAGACGACGATGATGAAGATGACAGTCTGGAAATGGAGAGTCCTTTAGAGTCGCCGGTTACTTTATCAGACTGTAAACGCAGCTCGCCCGAGGGGAAGTCTGTTTTCGGGGACAGTCCGGAACCTAATTATTGCCCCACAGAATCCAGCTCTACGTTATACTTCAGTGCCGACCCGCAATCCCCGAGCAGCTCCAGTAATCCGCGTTTGGATCGAGAAACGCCGTTCAGTTTCGGGTCTGGAACTGGACTGGAGACTCTGGATGAGCTGAGCCCGATTTCTACAGATGGCGGCCTGCACAGGGATCTGGTCAGAGGGCTTCTGGGCCGGGCGGGTCCCTGTTACACTTCCGCACCAGGGTTAAATGGAGAGGCTTCGGGATCACTCCTCAGGGGCCCTCGCAGGCAGGTGGTTTTGTCCCGTAGGGGTCCTGAAGATGACGTTGGattttaaggggatagttcaccccaaaaat

Function

symbol description
xkr5a Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR5 (XK related 5).

GO:

id name namespace
GO:0070782 phosphatidylserine exposure on apoptotic cell surface biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:1902742 apoptotic process involved in development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-160113-27 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR5 (XK related 5).

Ensembl:

ensembl_id ENSDARG00000103017

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035015 True 1465 mRNA 0.56 4 48100261 48105263

Neighbor

gene id symbol gene type direction distance location
XLOC_017674 NA coding upstream 16864 48072385 ~ 48083397 (+)
XLOC_017673 NA coding upstream 32173 48061746 ~ 48068088 (+)
XLOC_017672 NA coding upstream 65586 47988451 ~ 48034675 (+)
XLOC_017670 hadhaa coding upstream 115366 47953047 ~ 47984895 (+)
XLOC_017671 CU138532.1 coding upstream 117990 47982137 ~ 47982271 (+)
XLOC_017676 tram2 coding downstream 11213 48116476 ~ 48139941 (+)
XLOC_017677 CABZ01059119.1 coding downstream 308449 48413712 ~ 48447840 (+)
XLOC_017678 NA coding downstream 391277 48496540 ~ 48499747 (+)
XLOC_017679 NA coding downstream 397165 48502428 ~ 48517458 (+)
XLOC_017680 LO018254.1 coding downstream 438229 48543492 ~ 48545232 (+)
XLOC_017669 BX005121.1 non-coding upstream 340353 47759786 ~ 47759908 (+)
XLOC_017681 NA non-coding downstream 462991 48568254 ~ 48569823 (+)
XLOC_017682 NA non-coding downstream 465197 48570460 ~ 48571101 (+)
XLOC_017683 NA non-coding downstream 466044 48571307 ~ 48583599 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_06076254_06083211 XKR5 coding CI01000029 null 6076121 ~ 6084211 (+)