XLOC_017698


Basic Information

Item Value
gene id XLOC_017698
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 49189737 ~ 49351555 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036725
CGCTGTGTTGTCCAAACTAATATATGTCAAAAATGATTTCACATTACATCAAGCCCATTGTTAACTGACAGAGGTTTGATGTGTTCATTGTATCCAGAGTTTCGGAAGTGTTTGGAGCTGTATTAATCCTATGAGAGCGTGTGGGCGATGAATGAGCAGCGGCGGCGCACAGGAAGTGATTCAGCGGCCTGCAGATGCACTTTATCCGGCTTGAAAGAAGCGAGCATACCGCTGACCGCTTCGGAGACGCTGGATGTGTTGAGCTTAGCTTGGCTCCCGCTAGGTGGCAGCCACGACTAAGCTATGCttgatatgttttttatttttacctacCTCGTCTGCAGTCTGGATTTGAAGAAGCCCTGTAAAGCACGTGCTGATATGGAGAGTGAATTCTCTTGATGGCGGAGAAACTCTTCAGGTCTGGATGACATTCGAACGTGACCTGAAGTACATGCAAATGATGAGGACGTGCCCCATGAGTCATgcaacagtctgctttgtgttctgattggcgtTTTGTCCACTGGGGGTTTACTCAtgtggaatttacacaaggacgAGGGAACGATGGTGTCTGAGGAGCAAGACAAACAAGCACACGTAACCTTGCTCTGGCCTGCGGTGATGATGTGTTCTCCTGGCCGGGACAGCTCACGCTCTCTTTGGGGAGTCATGGAAAAACCGTCTGCTGTTGTCATCCCACCCAGAGGTTTTCTTTAAACAAGATCGCCCGCGCATACCTCCGTCTGGGGGTCTGAAAACCAAGAGTATGGGGAATGACCCACATttgctgctctctctctctcgcagcTGCTGCCGCTGCGCTGGAAATTGTGAATAAAGCCTGGCAATACGTCATTCTTGGTTGTAAAGTTGCTGCTAtgataatgtttgttttaatttgctGATAAAATATGTTTATGTCTCATACGGGGCCCATTATATCTC
>TCONS_00036726
CCAGAGTTTCGGAAGTGTTTGGAGCTGTATTAATCCTATGAGAGCGTGTGGGCGATGAATGAGCAGCGGCGGCGCACAGGAAGTGATTCAGCGGCCTGCAGATGCACTTTATCCGGCTTGAAAGAAGCGAGCATACCGCTGACCGCTTCGGAGACGCTGGATGTGTTGAGCTTAGCTTGGCTCCCGCTAGGTGGCAGCCACGACTAAGCTATGCttgatatgttttttatttttacctacCTCGTCTGCAGTCTGGATTTGAAGAAGCCCTGTAAAGCACGTGCTGATATGGAGAGGTCTGGATGACATTCGAACGTGACCTGAAGTACATGCAAATGATGAGGACGTGCCCCATGAGTCATgcaacagtctgctttgtgttctgattggcgtTTTGTCCACTGGGGGTTTACTCAtgtggaatttacacaaggacgAGGGAACGATGGTGTCTGAGGAGCAAGGCGAACATcgctgtcatgatcaccagcgatccagcctatgcagattgctggagaactacaattctaccactgaaccgaACTACAACTACCATGATGCTTAGCGCCAGTCAGCACCCGCTACAGCTGCAAACTATCTGGACTGATACACACAGATGTGAACGATCTAACAGCGAGACACGGCTgatccacacaaacacagcatCCTAAAGCAGAACACCATCATTCATCTCCAAACATCAGGCGGATCCACACACAGCG
>TCONS_00036727
CCAGAGTTTCGGAAGTGTTTGGAGCTGTATTAATCCTATGAGAGCGTGTGGGCGATGAATGAGCAGCGGCGGCGCACAGGAAGTGATTCAGCGGCCTGCAGATGCACTTTATCCGGCTTGAAAGAAGCGAGCATACCGCTGACCGCTTCGGAGACGCTGGATGTGTTGAGCTTAGCTTGGCTCCCGCTAGGTGGCAGCCACGACTAAGCTATGCttgatatgttttttatttttacctacCTCGTCTGCAGTCTGGATTTGAAGAAGCCCTGTAAAGCACGTGCTGATATGGAGAGGTCTGGATGACATTCGAACGTGACCTGAAGTACATGCAAATGATGAGGACGTGCCCCATGAGTCATgcaacagtctgctttgtgttctgattggcgtTTTGTCCACTGGGGGTTTACTCAtgtggaatttacacaaggacgAGGGAACGATGGTGTCTGAGGAGCAAGGCGAACATcgctgtcatgatcaccagcgatccagcctatgcagattgctggagaactacaattctaccactgaaccgaACTACAACTACCATGATGCTTAGCGCCAGTCAGCACCCGCTACAGCTGCAAACTATCTGGACTGATACACACAGGAATGACAGACGCTCATCTCTCATCATCATCAACGGCAGCGTCATCATCATCTTCCTCTGACAGTCAGTGCTGAAAGCAGAAGAGCTGTGTTTGTGTTGGACATTCCTGAGCTGATGGAGATTACTAGCGTTTcttcacagaggaaaaaTCCACCCTGGCTGCTTCTCTGGGAACGTCTGTATTTTCCACACACACTGCAGCTCAATGAAGGAAAATGACTTTTTTATAAGTCTTAAATAAGACTTCTGTATctggattaaaaataaatttacaccAAGCTACAGAATTAGTCTATAAGAG
>TCONS_00036728
TTGGAGCTGTATTAATCCTATGAGAGCGTGTGGGCGATGAATGAGCAGCGGCGGCGCACAGGAAGTGATTCAGCGGCCTGCAGATGCACTTTATCCGGCTTGAAAGAAGCGAGCATACCGCTGACCGCTTCGGAGACGCTGGATGTGTTGAGCTTAGCTTGGCTCCCGCTAGGTGGCAGCCACGACTAAGCTATGCttgatatgttttttatttttacctacCTCGTCTGCAGTCTGGATTTGAAGAAGCCCTGTAAAGCACGTGCTGATATGGAGAGGTCTGGATGACATTCGAACGTGACCTGAAGTACATGCAAATGATGAGGACGTGCCCCATGAGTCATgcaacagtctgctttgtgttctgattggcgtTTTGTCCACTGGGGGTTTACTCAtgtggaatttacacaaggacgAGGGAACGATGGTGTCTGAGGAGCAAGACAAACAAGCACACGTAACCTTGCTCTGGCCTGCGGTGATGATGTGTTCTCCTGGCCGGGACAGCTCACGCTCTCTTTGGGGAGTCATGGAAAAACCGTCTGCTGTTGTCATCCCACCCAGAGGTTTTCTTTAAACAAGATCGCCCGCGCATACCTCCGTCTGGGGGTCTGAAAACCAAGAGTATGGGGAATGACCCACATttgctgctctctctctctcgcagcTGCTGCCGCTGCGCTGGAAATTGTGAATAAAGCCTGGCAATACGTCATTCTTGGTTGTAAAGTTGCTGCTAtgataatgtttgttttaatttgctGATAAAATATGTTTATGTCTCATACGGGGCCCATTATATCTC
>TCONS_00036729
GCGGCGCACAGGAAGTGATTCAGCGGCCTGCAGATGCACTTTATCCGGCTTGAAAGAAGCGAGCATACCGCTGACCGCTTCGGAGACGCTGGATGTGTTGAGCTTAGCTTGGCTCCCGCTAGGTGGCAGCCACGACTAAGCTATGCttgatatgttttttatttttacctacCTCGTCTGCAGTCTGGATTTGAAGAAGCCCTGTAAAGCACGTGCTGATATGGAGAGGTCTGGATGACATTCGAACGTGACCTGAAGTACATGCAAATGATGAGGACGTGCCCCATGAGTCATgcaacagtctgctttgtgttctgattggcgtTTTGTCCACTGGGGGTTTACTCAtgtggaatttacacaaggacgAGGGAACGATGGTGTCTGAGGAGCAAGATGTTGGCGGCGTCCTGCTGTTCCAGTCTGCTGATTCTTCAGATGGGAGTAGATTTCTCCTTCAGAAAACTTTGCGTAACCCCATTCCTCCATGATTCACCCGTGCCCACCGACTCACCAGAAGTGTTTGCTGGAGCCCAGTTTCCAGGCACAGCAGTGGAACTTTGGTTACAGTAAAACAGGTGGATGATCTGGCCGGAATTGTGGAATCCTAGTGAATAAACAATGGGAGAAACAGGAGGAGGAGGAATGCAACCtcaaaaataaaagcag
>TCONS_00036730
GTTGAGCTTAGCTTGGCTCCCGCTAGGTGGCAGCCACGACTAAGCTATGCttgatatgttttttatttttacctacCTCGTCTGCAGTCTGGATTTGAAGAAGCCCTGTAAAGCACGTGCTGATATGGAGAGTGAATTCTCTTGATGGCGGAGAAACTCTTCAGGTCTGGATGACATTCGAACGTGACCTGAAGTACATGCAAATGATGAGGACGTGCCCCATGAGTCATgcaacagtctgctttgtgttctgattggcgtTTTGTCCACTGGGGGTTTACTCAtgtggaatttacacaaggacgAGGGAACGATGGTGTCTGAGGAGCAAGGCGAACATcgctgtcatgatcaccagcgatccagcctatgcagattgctggagaactacaattctaccactgaaccgaACTACAACTACCATGATGCTTAGCGCCAGTCAGCACCCGCTACAGCTGCAAACTATCTGGACTGATACACACAGATGTGAACGATCTAACAGCGAGACACGGCTgatccacacaaacacagcatCCTAAAGCAGAACACCATCATTCATCTCCAAACATCAGGCGGATCCACACACAGCG
>TCONS_00036731
CTGGATTTGAAGAAGCCCTGTAAAGCACGTGCTGATATGGAGAGTGAATTCTCTTGATGGCGGAGAAACTCTTCAGGTCTGGATGACATTCGAACGTGACCTGAAGTACATGCAAATGATGAGGACGTGCCCCATGAGTCATgcaacagtctgctttgtgttctgattggcgtTTTGTCCACTGGGGGTTTACTCAtgtggaatttacacaaggacgAGGGAACGATGGTGTCTGAGGAGCAAGGCGAACATcgctgtcatgatcaccagcgatccagcctatgcagattgctggagaactacaattctaccactgaaccgaACTACAACTACCATGATGCTTAGCGCCAGTCAGCACCCGCTACAGCTGCAAACTATCTGGACTGATACACACAGGAATGACAGACGCTCATCTCTCATCATCATCAACGGCAGCGTCATCATCATCTTCCTCTGACAGTCAGTGCTGAAAGCAGAAGAGCTGTGTTTGTGTTGGACATTCCTGAGCTGATGGAGATTACTAGCGTTTcttcacagaggaaaaaTCCACCCTGGCTGCTTCTCTGGGAACGTCTGTATTTTCCACACACACTGCAGCTCAATGAAGGAAAATGACTTTTTTATAAGTCTTAAATAAGACTTCTGTATctggattaaaaataaatttacaccAAGCTACAGAATTAGTCTATAAGAG

Function

GO:

id name namespace
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036725 False 951 lncRNA 0.48 3 49189737 49204478
TCONS_00036726 False 722 lncRNA 0.50 4 49189830 49304606
TCONS_00036727 False 917 lncRNA 0.47 5 49189830 49351555
TCONS_00036728 False 808 lncRNA 0.49 3 49189848 49204478
TCONS_00036729 False 669 lncRNA 0.50 3 49189898 49256176
TCONS_00036730 False 590 lncRNA 0.48 4 49189994 49304606
TCONS_00036731 True 697 lncRNA 0.45 5 49190082 49351555

Neighbor

gene id symbol gene type direction distance location
XLOC_017697 cd109 coding upstream 14234 49119633 ~ 49175503 (+)
XLOC_017696 crnkl1 coding upstream 86420 49081967 ~ 49103317 (+)
XLOC_017695 LO017960.1 coding upstream 156619 49033004 ~ 49033118 (+)
XLOC_017694 NA coding upstream 162464 49003776 ~ 49027273 (+)
XLOC_017693 NA coding upstream 201623 48918454 ~ 48988114 (+)
XLOC_017700 NA coding downstream 99438 49450993 ~ 49459757 (+)
XLOC_017701 HMBOX1 coding downstream 436029 49787584 ~ 49804597 (+)
XLOC_017702 ints9 coding downstream 543665 49895220 ~ 49928430 (+)
XLOC_017703 riox1 coding downstream 663915 50015470 ~ 50044755 (+)
XLOC_017704 cpsf2 coding downstream 700561 50052116 ~ 50089898 (+)
XLOC_017692 BX005124.3 non-coding upstream 295736 48893342 ~ 48894001 (+)
XLOC_017691 BX005124.2 non-coding upstream 302204 48886477 ~ 48887533 (+)
XLOC_017706 NA non-coding downstream 858542 50210097 ~ 50298343 (+)
XLOC_017707 CU570682.1 non-coding downstream 896537 50248092 ~ 50249827 (+)
XLOC_017708 NA non-coding downstream 977673 50329228 ~ 50332544 (+)
XLOC_017709 NA non-coding downstream 1099914 50451469 ~ 50504264 (+)

Expression


Co-expression Network