XLOC_017701 (HMBOX1)


Basic Information

Item Value
gene id XLOC_017701
gene name HMBOX1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 49787584 ~ 49804597 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035036
TTCCTTTCTTCCTACCGGGAAATGTCTCACTACACAGACGAGCCACGCTTCACCATCGAACAGATCGACCTCCTCCAGAGACTGCGGCGCACAGGTATGACCAGACCCGAGATCGTGCACGCCCTCGACACCTTGGAGCGACTCGACCGTGAACACGGCGACAAATTTGGCCGCCGCGGCCCCACTACACCCACCTCAAATAACGCTAGCAATGCCACCATGGCAACTTCCTCCACCACTTCCACAGCAACTCAGACGCAGTTCCCTGGCAACCTATCGCCCTCGCCTAGCAACAGCTATGCCACATCTCCACCCGCTAACGGACGGGACGCTCTGGCAGCCACACCCAATGGGAAACTATCACCAAACCGCTACACAGTGAACAGTTCTGTGGCTGTGAGGACGTACACACTCGAGGGGTCCGAGGAAGACCTGGATATAGATGACAAGGTGGAGGAGCTCATGAGGCGGGACAGCTCACTGGTGAAGGAGGAAATCAAAGCCTTCCTGGGAAACAGACGCATCTCACAGGCCGTGGTGGCTCAGGTCACAGGCATCAGTCAGAGCAGGATCTCTCACTGGCTCCTCCAGCAGGGCTCAGATCTCAGCGAACAGAAGAAACGAGCTTTCTATCGCTGGTACCAGCTGGAGAAAACCACGCCAGGTGCCACCCTAAACATGCGGCCCACCCCCGTATCTCTAGAAGAGATGGAGTGGCGTCAGACTCCACCCCCTATAAGCTCCGCCCCCGGAAGCTTCCGTCTGCGCAGAGGCAGTCGGTTCACCTGGAGGAAGGAATGTCTCGCTtgcAAAGGACATCTTTTAAAGAGAGCCTGA
>TCONS_00035037
TTCCTTTCTTCCTACCGGGAAATGTCTCACTACACAGACGAGCCACGCTTCACCATCGAACAGATCGACCTCCTCCAGAGACTGCGGCGCACAGGTATGACCAGACCCGAGATCGTGCACGCCCTCGACACCTTGGAGCGACTCGACCGTGAACACGGCGACAAATTTGGCCGCCGCGGCCCCACTACACCCACCTCAAATAACGCTAGCAATGCCACCATGGCAACTTCCTCCACCACTTCCACAGCAACTCAGACGCAGTTCCCTGGCAACCTATCGCCCTCGCCTAGCAACAGCTATGCCACATCTCCACCCGCTAACGGACGGGACGCTCTGGCAGCCACACCCAATGGGAAACTATCACCAAACCGCTACACAGTGAACAGTTCTGTGGCTGTGAGGACGTACACACTCGAGGGGTCCGAGGAAGACCTGGATATAGATGACAAGGTGGAGGAGCTCATGAGGCGGGACAGCTCACTGGTGAAGGAGGAAATCAAAGCCTTCCTGGGAAACAGACGCATCTCACAGGCCGTGGTGGCTCAGGTCACAGGCATCAGTCAGAGCAGGATCTCTCACTGGCTCCTCCAGCAGGGCTCAGATCTCAGCGAACAGAAGAAACGAGCTTTCTATCGCTGGTACCAGCTGGAGAAAACCACGCCAGGTGCCACCCTAAACATGCGGCCCACCCCCGTATCTCTAGAAGAGATGGAGTGGCGTCAGACTCCACCCCCTATAAGCTCCGCCCCCGGAAGCTTCCGTCTGCGCAGAGGCAGTCGGTTCACCTGGAGGAAGGAATGTCTCGCTGTGATGGAGAGTTATTTCAGTGATAATCAATATCCAGATGAAGCCAAAAGAGAGGAGATCGCCAACGCCTGCAATGCTGTCATTCAGAAACCAGGAAAGAAGTTGTCTGATTTGGAAAGAGTCACGTCCTTAAAAGTCTACAACTGGTTTGCCAACCGACGCAAAGAGATCAAGAGGAGGGCCAATATTGCCACAATCCTGGAGAGTCATGGGATTGATGTTCAGAGTCCTGGAGGACACTCTAACAGCGACGATGTCGACGCTAATGACTACAGCGAGCAGGTGTGTTGGGTGACACACACAAGTAAGCATGGCAGCAGCAAAAAAGGTGGACATAAGGTGCAACGAAAGTGTAAGTCACGTAAACGCAAGTTGGCTACTGAATGA
>TCONS_00035038
TTCCTTTCTTCCTACCGGGAAATGTCTCACTACACAGACGAGCCACGCTTCACCATCGAACAGATCGACCTCCTCCAGAGACTGCGGCGCACAGGTATGACCAGACCCGAGATCGTGCACGCCCTCGACACCTTGGAGCGACTCGACCGTGAACACGGCGACAAATTTGGCCGCCGCGGCCCCACTACACCCACCTCAAATAACGCTAGCAATGCCACCATGGCAACTTCCTCCACCACTTCCACAGCAACTCAGACGCAGTTCCCTGGCAACCTATCGCCCTCGCCTAGCAACAGCTATGCCACATCTCCACCCGCTAACGGACGGGACGCTCTGGCAGCCACACCCAATGGGAAACTATCACCAAACCGCTACACAGTGAACAGTTCTGTGGCTGTGAGGACGTACACACTCGAGGGGTCCGAGGAAGACCTGGATATAGATGACAAGGTGGAGGAGCTCATGAGGCGGGACAGCTCACTGGTGAAGGAGGAAATCAAAGCCTTCCTGGGAAACAGACGCATCTCACAGGCCGTGGTGGCTCAGGTCACAGGCATCAGTCAGAGCAGGATCTCTCACTGGCTCCTCCAGCAGGGCTCAGATCTCAGCGAACAGAAGAAACGAGCTTTCTATCGCTGGTACCAGCTGGAGAAAACCACGCCAGGTGCCACCCTAAACATGCGGCCCACCCCCGTATCTCTAGAAGAGATGGAGTGGCGTCAGACTCCACCCCCTATAAGCTCCGCCCCCGGAAGCTTCCGTCTGCGCAGAGGCAGTCGGTTCACCTGGAGGAAGGAATGTCTCGCTGTGATGGAGAGTTATTTCAGTGATAATCAATATCCAGATGAAGCCAAAAGAGAGGAGATCGCCAACGCCTGCAATGCTGTCATTCAGAAACCAGGAAAGAAGTTGTCTGATTTGGAAAGAGTCACGTCCTTAAAAGTCTACAACTGGTTTGCCAACCGACGCAAAGAGATCAAGAGGAGGGCCAATATTGCCACAATCCTGGAGAGTCATGGGATTGATGTTCAGAGTCCTGGAGGACACTCTAACAGCGACGATGTCGACGCTAATGACTACAGCGAGCAGGCTGATATAGGCTAG
>TCONS_00035039
TTCCTTTCTTCCTACCGGGAAATGTCTCACTACACAGACGAGCCACGCTTCACCATCGAACAGATCGACCTCCTCCAGAGACTGCGGCGCACAGGTATGACCAGACCCGAGATCGTGCACGCCCTCGACACCTTGGAGCGACTCGACCGTGAACACGGCGACAAATTTGGCCGCCGCGGCCCCACTACACCCACCTCAAATAACGCTAGCAATGCCACCATGGCAACTTCCTCCACCACTTCCACAGCAACTCAGACGCAGTTCCCTGGCAACCTATCGCCCTCGCCTAGCAACAGCTATGCCACATCTCCACCCGCTAACGGACGGGACGCTCTGGCAGCCACACCCAATGGGAAACTATCACCAAACCGCTACACAGTGAACAGTTCTGTGGCTGTGAGGACGTACACACTCGAGGGGTCCGAGGAAGACCTGGATATAGATGACAAGGTGGAGGAGCTCATGAGGCGGGACAGCTCACTGGTGAAGGAGGAAATCAAAGCCTTCCTGGGAAACAGACGCATCTCACAGGCCGTGGTGGCTCAGGTCACAGGCATCAGTCAGAGCAGGATCTCTCACTGGCTCCTCCAGCAGGGCTCAGATCTCAGCGAACAGAAGAAACGAGCTTTCTATCGCTGGTACCAGCTGGAGAAAACCACGCCAGGTGCCACCCTAAACATGCGGCCCACCCCCGTATCTCTAGAAGAGATGGAGTGGCGTCAGACTCCACCCCCTATAAGCTCCGCCCCCGGAAGCTTCCGTCTGCGCAGAGGCAGTCGGTTCACCTGGAGGAAGGAATGTCTCGCTGTGATGGAGAGTTATTTCAGTGATAATCAATATCCAGATGAAGCCAAAAGAGAGGAGATCGCCAACGCCTGCAATGCTGTCATTCAGAAACCAGGAAAGAAGTTGTCTGATTTGGAAAGAGTCACGTCCTTAAAAGTCTACAACTGGTTTGCCAACCGACGCAAAGAGATCAAGAGGAGGGCCAATATTGCCACAATCCTGGAGAGTCATGGGATTGATGTTCAGAGTCCTGGAGGACACTCTAACAGCGACGATGTCGACGCTAATGACTACAGCGAGCAGGTGAACCGGTCTTTCACTGAATCTCTCAGgattttatttaacacaattTGGGAAAAACAAGAAACTACTTTTAATTCAGTCTTGGCAAATCTTTATTTtgttctaaattag
>TCONS_00035040
TTCCTTTCTTCCTACCGGGAAATGTCTCACTACACAGACGAGCCACGCTTCACCATCGAACAGATCGACCTCCTCCAGAGACTGCGGCGCACAGGTATGACCAGACCCGAGATCGTGCACGCCCTCGACACCTTGGAGCGACTCGACCGTGAACACGGCGACAAATTTGGCCGCCGCGGCCCCACTACACCCACCTCAAATAACGCTAGCAATGCCACCATGGCAACTTCCTCCACCACTTCCACAGCAACTCAGACGCAGTTCCCTGGCAACCTATCGCCCTCGCCTAGCAACAGCTATGCCACATCTCCACCCGCTAACGGACGGGACGCTCTGGCAGCCACACCCAATGGGAAACTATCACCAAACCGCTACACAGTGAACAGTTCTGTGGCTGTGAGGACGTACACACTCGAGGGGTCCGAGGAAGACCTGGATATAGATGACAAGGTGGAGGAGCTCATGAGGCGGGACAGCTCACTGGTGAAGGAGGAAATCAAAGCCTTCCTGGGAAACAGACGCATCTCACAGGCCGTGGTGGCTCAGGTCACAGGCATCAGTCAGAGCAGGATCTCTCACTGGCTCCTCCAGCAGGGCTCAGATCTCAGCGAACAGAAGAAACGAGCTTTCTATCGCTGGTACCAGCTGGAGAAAACCACGCCAGGTGCCACCCTAAACATGCGGCCCACCCCCGTATCTCTAGAAGAGATGGAGTGGCGTCAGACTCCACCCCCTATAAGCTCCGCCCCCGGAAGCTTCCGTCTGCGCAGAGGCAGTCGGTTCACCTGGAGGAAGGAATGTCTCGCTGTGATGGAGAGTTATTTCAGTGATAATCAATATCCAGATGAAGCCAAAAGAGAGGAGATCGCCAACGCCTGCAATGCTGTCATTCAGAAACCAGGAAAGAAGTTGTCTGATTTGGAAAGAGTCACGTCCTTAAAAGTCTACAACTGGTTTGCCAACCGACGCAAAGAGATCAAGAGGAGGGCCAATATTGAAGCCACAATCCTGGAGAGTCATGGGATTGATGTTCAGAGTCCTGGAGGACACTCTAACAGCGACGATGTCGACGCTAATGACTACAGCGAGCAGGACGACGCCGGCAATCACGCGGACCATCAAGACCCCATCTCTCTGGCCGTGGAGATGGCAGCTGTCAATCACAGCATCCTCGCCCTATCCCGTCCAGGAGGCGTGGCCAGTGAAATCAAAACAGAAGCGATAGATGACGACTGA

Function

symbol description
hmbox1 Enables double-stranded telomeric DNA binding activity; identical protein binding activity; and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of telomerase activity; and positive regulation of telomere maintenance via telomerase. Located in several cellular components, including centrosome; chromosome, telomeric region; and nuclear body.

GO: NA

KEGG:

id description
ko03000 Transcription factors

Ensembl:

ensembl_id ENSDARG00000109287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035036 False 837 mRNA 0.57 8 49787584 49800330
TCONS_00035037 False 1194 mRNA 0.54 11 49787584 49801935
TCONS_00035038 False 1104 mRNA 0.55 11 49787584 49801983
TCONS_00035039 False 1200 mRNA 0.53 11 49787584 49804292
TCONS_00035040 True 1236 mRNA 0.55 11 49787584 49804597

Neighbor

gene id symbol gene type direction distance location
XLOC_017700 NA coding upstream 327827 49450993 ~ 49459757 (+)
XLOC_017698 NA coding upstream 436029 49189737 ~ 49351555 (+)
XLOC_017699 NA coding upstream 479981 49306976 ~ 49307603 (+)
XLOC_017697 cd109 coding upstream 612081 49119633 ~ 49175503 (+)
XLOC_017696 crnkl1 coding upstream 684267 49081967 ~ 49103317 (+)
XLOC_017702 ints9 coding downstream 90623 49895220 ~ 49928430 (+)
XLOC_017703 riox1 coding downstream 210873 50015470 ~ 50044755 (+)
XLOC_017704 cpsf2 coding downstream 247519 50052116 ~ 50089898 (+)
XLOC_017705 slc24a4b coding downstream 310738 50115335 ~ 50198207 (+)
XLOC_017706 NA coding downstream 405500 50210097 ~ 50298343 (+)
XLOC_017695 LO017960.1 non-coding upstream 754466 49033004 ~ 49033118 (+)
XLOC_017694 NA non-coding upstream 760311 49003776 ~ 49027273 (+)
XLOC_017707 CU570682.1 non-coding downstream 443495 50248092 ~ 50249827 (+)
XLOC_017708 NA non-coding downstream 524631 50329228 ~ 50332544 (+)
XLOC_017709 NA non-coding downstream 646872 50451469 ~ 50504264 (+)
XLOC_017714 AL928824.2 non-coding downstream 1258277 51062874 ~ 51156101 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_06724205_06734079 HMBOX1B, HMBOX1 coding CI01000029 null 6724205 ~ 6735582 (+)
bowfin (Amia calva) AMCG00003713 NA coding CM030121.1 CM030121.1 16071552 ~ 16079315 (+)