RNA id: TCONS_00035039


Basic Information

Item Value
RNA id TCONS_00035039
length 1200
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_017701
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 49787584 ~ 49804597 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCTTTCTTCCTACCGGGAAATGTCTCACTACACAGACGAGCCACGCTTCACCATCGAACAGATCGACCTCCTCCAGAGACTGCGGCGCACAGGTATGACCAGACCCGAGATCGTGCACGCCCTCGACACCTTGGAGCGACTCGACCGTGAACACGGCGACAAATTTGGCCGCCGCGGCCCCACTACACCCACCTCAAATAACGCTAGCAATGCCACCATGGCAACTTCCTCCACCACTTCCACAGCAACTCAGACGCAGTTCCCTGGCAACCTATCGCCCTCGCCTAGCAACAGCTATGCCACATCTCCACCCGCTAACGGACGGGACGCTCTGGCAGCCACACCCAATGGGAAACTATCACCAAACCGCTACACAGTGAACAGTTCTGTGGCTGTGAGGACGTACACACTCGAGGGGTCCGAGGAAGACCTGGATATAGATGACAAGGTGGAGGAGCTCATGAGGCGGGACAGCTCACTGGTGAAGGAGGAAATCAAAGCCTTCCTGGGAAACAGACGCATCTCACAGGCCGTGGTGGCTCAGGTCACAGGCATCAGTCAGAGCAGGATCTCTCACTGGCTCCTCCAGCAGGGCTCAGATCTCAGCGAACAGAAGAAACGAGCTTTCTATCGCTGGTACCAGCTGGAGAAAACCACGCCAGGTGCCACCCTAAACATGCGGCCCACCCCCGTATCTCTAGAAGAGATGGAGTGGCGTCAGACTCCACCCCCTATAAGCTCCGCCCCCGGAAGCTTCCGTCTGCGCAGAGGCAGTCGGTTCACCTGGAGGAAGGAATGTCTCGCTGTGATGGAGAGTTATTTCAGTGATAATCAATATCCAGATGAAGCCAAAAGAGAGGAGATCGCCAACGCCTGCAATGCTGTCATTCAGAAACCAGGAAAGAAGTTGTCTGATTTGGAAAGAGTCACGTCCTTAAAAGTCTACAACTGGTTTGCCAACCGACGCAAAGAGATCAAGAGGAGGGCCAATATTGCCACAATCCTGGAGAGTCATGGGATTGATGTTCAGAGTCCTGGAGGACACTCTAACAGCGACGATGTCGACGCTAATGACTACAGCGAGCAGGTGAACCGGTCTTTCACTGAATCTCTCAGgattttatttaacacaattTGGGAAAAACAAGAAACTACTTTTAATTCAGTCTTGGCAAATCTTTATTTtgttctaaattag

Function

GO: NA

KEGG:

id description
ko03000 Transcription factors

Ensembl:

ensembl_id ENSDART00000185613

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036733 lncRNA upstream 327827 49450993 ~ 49459757 (+) True XLOC_017700
TCONS_00036731 lncRNA upstream 436029 49190082 ~ 49351555 (+) True XLOC_017698
TCONS_00036732 lncRNA upstream 479981 49306976 ~ 49307603 (+) True XLOC_017699
TCONS_00036730 lncRNA upstream 482978 49189994 ~ 49304606 (+) False XLOC_017698
TCONS_00036729 lncRNA upstream 531408 49189898 ~ 49256176 (+) False XLOC_017698
TCONS_00036734 lncRNA downstream 405805 50210097 ~ 50295629 (+) False XLOC_017706
TCONS_00036735 lncRNA downstream 405805 50210097 ~ 50298343 (+) True XLOC_017706
TCONS_00035050 lncRNA downstream 443800 50248092 ~ 50249827 (+) True XLOC_017707
TCONS_00036736 lncRNA downstream 524936 50329228 ~ 50332544 (+) False XLOC_017708
TCONS_00036737 lncRNA downstream 525050 50329342 ~ 50332544 (+) False XLOC_017708
TCONS_00035035 mRNA upstream 612081 49119633 ~ 49175503 (+) False XLOC_017697
TCONS_00035034 mRNA upstream 684267 49081967 ~ 49103317 (+) True XLOC_017696
TCONS_00035027 mRNA upstream 980856 48803248 ~ 48806728 (+) True XLOC_017690
TCONS_00035026 mRNA upstream 1001593 48782068 ~ 48785991 (+) True XLOC_017689
TCONS_00035025 mRNA upstream 1012990 48754045 ~ 48774594 (+) True XLOC_017688
TCONS_00035041 mRNA downstream 90928 49895220 ~ 49928430 (+) True XLOC_017702
TCONS_00035042 mRNA downstream 211178 50015470 ~ 50044324 (+) False XLOC_017703
TCONS_00035043 mRNA downstream 211397 50015689 ~ 50037468 (+) False XLOC_017703
TCONS_00035044 mRNA downstream 211397 50015689 ~ 50044755 (+) True XLOC_017703
TCONS_00035045 mRNA downstream 247824 50052116 ~ 50086093 (+) False XLOC_017704
TCONS_00035033 other upstream 754466 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 1174148 48613321 ~ 48613436 (+) True XLOC_017687
TCONS_00035022 other upstream 1175214 48612257 ~ 48612370 (+) True XLOC_017686
TCONS_00035021 other upstream 1176274 48611195 ~ 48611310 (+) True XLOC_017685
TCONS_00035020 other upstream 1177117 48610352 ~ 48610467 (+) True XLOC_017684
TCONS_00035066 other downstream 1407640 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035075 other downstream 1711910 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035099 other downstream 3115564 52919856 ~ 52919986 (+) True XLOC_017742

Expression Profile

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